Volume 24, Issue 5 | Functional & Integrative Genomics

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Volume 24, Issue 5

October 2024

51 articles in this issue

Identification of lncRNAs regulating seed traits in Brassica juncea and development of a comprehensive seed omics database
Pinky Yadav
Prachi Priyam
Namrata Dhaka
Research 15 October 2024 Article: 189
Identification, charectrization and genetic transformation of lignin and pectin polysaccharides through CRISPR/Cas9 in Nicotiana tobacum
Rana Imtiaz Ahmed
Angyan Ren
Mahmood Ul Hassan Taga
Research 14 October 2024 Article: 188
Part of 1 collection:

Trends in Plant Genome-based Tools for Future Food Security under Changing Climate
Reference-based genome assembly and comparative genomics of Calamus Brandisii Becc. for unveiling sex-specific genes for early gender detection
Muneera Parveen Abdul Bari
Suma Arun Dev
Modhumita Ghosh Dasgupta
Research 10 October 2024 Article: 187
Part of 1 collection:

Plant Genomics and Gene Editing
The mechanism of MMP14-positive tumor-associated fibroblast subsets in inhibiting PD-1 immunotherapy for esophageal cancer through exosomal tsRNA-10522
Juzheng Wang
Chunlong Zheng
Qiang Lu
Research Open access 08 October 2024 Article: 186
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Integrative Analysis of Multiple-omics Data for Precision Cancer Diagnosis and Treatment
Nuclear integration of MYB36 and APX-1 genes impart heat tolerance in wheat
Hina Firdous
Arfan Ali
Xuefei Jiang
Research 07 October 2024 Article: 185
Part of 1 collection:

Trends in Plant Genome-based Tools for Future Food Security under Changing Climate
ALDH2 alleviates inflammation and facilitates osteogenic differentiation of periodontal ligament stem cells in periodontitis by blocking ferroptosis via activating Nrf2
Jia Chen
Chen Hu
Yiqiang Yang
Research 07 October 2024 Article: 184
KRAS mutations detection methodology: from RFLP to CRISPR/Cas based methods
Firouzeh Morshedzadeh
Mohammad Reza Abbaszadegan
Sina Mozaffari-Jovin
Review 05 October 2024 Article: 183
Machine learning in oncological pharmacogenomics: advancing personalized chemotherapy
Cigir Biray Avci
Bakiye Goker Bagca
Alireza Nourazarian
Review 04 October 2024 Article: 182
Complete chloroplast genome sequence of Artemisia littoricola (Asteraceae) from Dokdo Island Korea: genome structure, phylogenetic analysis, and biogeography study
Suhas K. Kadam
Jin-Suk Youn
Yeon-Sik Choo
Research 04 October 2024 Article: 181
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Plant Genomics and Gene Editing
FANCD2 genome binding is nonrandom and is enriched at large transcriptionally active neural genes prone to copy number variation
Justin L. Blaize
Jada Lauren N. Garzon
Niall G. Howlett
Research Open access 04 October 2024 Article: 180
Correction to: QTL-seq identifies genomic region associated with the crown root development under Jasmonic acid response
Tam Thi Thanh Tran
Liem Huu Minh Le
Huong Thi Mai To
Correction 02 October 2024 Article: 179
The role of lipoprotein‑associated phospholipase A2 in inflammatory response and macrophage infiltration in sepsis and the regulatory mechanisms
Li Jin
Mengxiao Jiang
Wenjie Liao
Research 30 September 2024 Article: 178
Exploring the potential of nanomedicine for gene therapy across the physicochemical and cellular barriers
Huma Hameed
Hafiz Shoaib Sarwar
Muhammad Farhan Sohail
Review 28 September 2024 Article: 177
Epigenetic gene silencing in plants: Insights from triplet repeat expansion in Arabidopsis
Jieni Gu
Iqra Noor
Hamza Sohail
Correspondence 28 September 2024 Article: 176
LncRNAs orchestration of gastric cancer - particular emphasis on the etiology, diagnosis, and treatment resistance
Hanan Elimam
Rewan Moussa
Ahmed S. Doghish
Review 26 September 2024 Article: 175
Hybrid-genome sequence analysis of Enterobacter cloacae FACU and morphological characterization: insights into a highly arsenic-resistant strain
Abdelhadi A. Abdelhadi
Nagwa I. Elarabi
Asmaa A. Halema
Research 25 September 2024 Article: 174
m6A methylation in myocardial tissue of septic mice analyzed using MeRIP/m6A-sequencing and RNA-sequencing
Xue Liang
Xiaotong Hu
Lijun Wang
Research 25 September 2024 Article: 173
Correction to: Identification of predictors for neurological outcome after cardiac arrest in peripheral blood mononuclear cells through integrated bioinformatics analysis and machine learning
Zhonghao Li
Ying Qin
Guoqiang Zhang
Correction Open access 25 September 2024 Article: 172
Transcription factor YY1 adversely governs ovarian granulosa cell growth in PCOS by transcription activation-mediated CDKN1C upregulation
Shitao Dong
Youbin Liu
Zhimin Yang
Research 25 September 2024 Article: 171
Molecular analyses of the tubby-like protein gene family and their response to salt and high temperature in the foxtail millet (Setaria italica)
Zhuanzhuan Jiang
Xiaoqi Chen
Ke Li
Research 25 September 2024 Article: 170
Programmed cell death and melatonin: A comprehensive review
Mahdi Rafiyian
Russel J. Reiter
Zatollah Asemi
Review 24 September 2024 Article: 169
Ischemic cardiac stromal fibroblast-derived protein mediators in the infarcted myocardium and transcriptomic profiling at single cell resolution
Ed Cha
Sung Ho Hong
Finosh G. Thankam
Research Open access 20 September 2024 Article: 168
Deciphering the role of FOXP4 in long COVID: exploring genetic associations, evolutionary conservation, and drug identification through bioinformatics analysis
Manoj Kumar Gupta
Gayatri Gouda
Ramakrishna Vadde
Research 19 September 2024 Article: 167
Cancer pharmacoinformatics: Databases and analytical tools
Pradnya Kamble
Prinsa R. Nagar
Prasad V. Bharatam
Review 19 September 2024 Article: 166
lncRNA HOTAIR and Cardiovascular diseases
Sina Taghvimi
Elahe Soltani Fard
Hassan Ghasemi
Review 19 September 2024 Article: 165
Advances in targeting cancer epigenetics using CRISPR-dCas9 technology: A comprehensive review and future prospects
Jeevitha Rajanathadurai
Elumalai Perumal
Jospin Sindya
Review 18 September 2024 Article: 164
C-FOS inhibition promotes pancreatic cancer cell ferroptosis by transcriptionally regulating the expression of SLC7A11
Shuangjia Wang
Hao Yu
Zhimin Li
Research 18 September 2024 Article: 163
Is the voltage-gated sodium channel β3 subunit (SCN3B) a biomarker for glioma?
Hengrui Liu
Jieling Weng
Antony P. Jackson
Correspondence 18 September 2024 Article: 162
Tet1-mediated activation of the Ampk signaling by Trpv1 DNA hydroxymethylation exerts neuroprotective effects in a rat model of Parkinson’s disease
Yu Fan
Po Wang
Jiahui Liu
Research 17 September 2024 Article: 161
Exploring the transcription start sites and other genomic features facilitates the accurate identification and annotation of small RNAs across multiple stress conditions in Mycobacterium tuberculosis
Hong-Leong Cheah
Marimuthu Citartan
Thean-Hock Tang
Research 12 September 2024 Article: 160
LncRNA XIST/miR-455-3p/HOXC4 axis promotes breast cancer development by activating TGF-β/SMAD signaling pathway
Shanshan Zhao
Chen Song
Man Li
Research 12 September 2024 Article: 159
Long non-coding RNA MAGEA4-AS1 binding to p53 enhances MK2 signaling pathway and promotes the proliferation and metastasis of oral squamous cell carcinoma
Xiaoxiao Wei
Zhangfu Li
Yuehong Shen
Research Open access 09 September 2024 Article: 158
AC092100.1 promotes angiogenesis in pre-eclampsia through YTHDC2/VEGFA signaling
Wenjing Yong
Yu Jian
Ping Li
Research 06 September 2024 Article: 157
Integrative analyses of long and short-read RNA sequencing reveal the spliced isoform regulatory network of seedling growth dynamics in upland cotton
Kashif Shahzad
Meng Zhang
Chaozhu Xing
Research 04 September 2024 Article: 156
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Plant Genomics and Gene Editing
Biotechnological frontiers in harnessing allelopathy for sustainable crop production
Nazish Akhtar
Mo Shadab
M. B. Siddiqui
Review 04 September 2024 Article: 155
Part of 1 collection:

Plant Genomics and Gene Editing
Genomic profiling of pan-drug resistant proteus mirabilis Isolates reveals antimicrobial resistance and virulence gene landscape
Sarah Soliman
Salah Abdalla
Shymaa Enany
Research Open access 03 September 2024 Article: 154
Revolutionizing soybean genomics: How CRISPR and advanced sequencing are unlocking new potential
Muhammad Khuram Razzaq
Muhammad Naveed Babur
Kadambot H. M. Siddique
Review 03 September 2024 Article: 153
Part of 1 collection:

Trends in Plant Genome-based Tools for Future Food Security under Changing Climate
Microproteins unveiling new dimensions in cancer
S. Daisy Precilla
Indrani Biswas
B. Agieshkumar
Review 03 September 2024 Article: 152
Correction to: Single‑cell analysis identified PDIA3 as regulator of malignant characteristics and macrophage function in human cancers
Wantao Wu
Gang Peng
Gelei Xiao
Correction 02 September 2024 Article: 151
Modulatory effects of miRNAs in doxorubicin resistance: A mechanistic view
Fatemeh Ebadi Meinag
Mina Fatahi
Mohammad Rahmati
Review 02 September 2024 Article: 150
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Epigenomics in Cancer: Mechanisms and Potential Therapeutics
Milletomics: a metabolomics centered integrated omics approach toward genetic progression
Saikat Mazumder
Debasmita Bhattacharya
Moupriya Nag
Review 02 September 2024 Article: 149
Part of 1 collection:

Trends in Plant Genome-based Tools for Future Food Security under Changing Climate
Biotechnological studies towards improvement of finger millet using multi-omics approaches
Rushikesh Sanjay Mane
Bishun Deo Prasad
V. K. Sharma
Review 02 September 2024 Article: 148
Part of 1 collection:

Plant Genomics and Gene Editing
Bladder cancer: non-coding RNAs and exosomal non-coding RNAs
Jingang Zhao
Yangyang Ma
Jing Cao
Review 31 August 2024 Article: 147
Signaling molecules in the microenvironment of hepatocellular carcinoma
Wanjin Chen
Ming Tan
Juan Chen
Review 29 August 2024 Article: 146
Infection by a multidrug-resistant Corynebacterium diphtheriae strain: prediction of virulence factors, CRISPR-Cas system analysis, and structural implications of mutations conferring rifampin resistance
Max Roberto Batista Araújo
Fernanda Diniz Prates
Vasco Azevedo
Research 28 August 2024 Article: 145
Application of single cell sequencing technology in ovarian cancer research (review)
Qiqolei Yuan
Nengyuan Lv
Jinyi Tong
Review Open access 28 August 2024 Article: 144
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Research Spotlights
Clinical trials and recent progress in HIV vaccine development
Akmal Zubair
Bushra Bibi
Muhammad Ali
Review 28 August 2024 Article: 143
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Contextualization of genomics by phenomics in tracking human disease trajectories
Whole-genome sequencing and identification of antimicrobial peptide coding genes in parsley (Petroselinum crispum), an important culinary and medicinal Apiaceae species
Ali Tevfik Uncu
Aysenur Soyturk Patat
Ayse Ozgur Uncu
Research 27 August 2024 Article: 142
QTL-seq identifies genomic region associated with the crown root development under Jasmonic acid response
Tam Thi Thanh Tran
Liem Huu Minh Le
Huong Thi Mai To
Correspondence 20 August 2024 Article: 141
Regulatory axis of circular RNA DTNB, microRNA-485-5p, and myeloid cell leukemia 1 attenuates inflammation and apoptosis in caerulein-treated AR42J cells
Xiao Tian
Yun Zhang
YuXi Hou
Research 20 August 2024 Article: 140