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Bioinformatics Research and Applications

9th International Symposium, ISBRA 2013, Charlotte, NC, USA, May 20-22, 2013, Proceedings

  • Conference proceedings
  • © 2013

Overview

Editors:
  1. Zhipeng Cai

    1. Computer Science, Georgia State University, Atlanta, USA

  2. Oliver Eulenstein

    1. Computer Science, Iowa State University, Ames, USA

  3. Daniel Janies

    1. Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, USA

  4. Daniel Schwartz

    1. Physiology and Neurobiology, University of Connecticut, Storrs, USA

  • Fast-track conference proceedings
  • State-of-the-art research
  • Up-to-date results

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 7875)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: ISBRA 2013.

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About this book

This book constitutes the refereed proceedings of the 9th International Symposium on Bioinformatics Research and Applications, ISBRA 2013, held in Charlotte, NC, USA, in May 2013. The 25 revised full papers presented together with 4 invited talks were carefully reviewed and selected from 46 submissions. The papers cover a wide range of biomedical databases and data integration, high-performance bio-computing, biomolecular imaging, high-throughput sequencing data analysis, bio-ontologies, molecular evolution, comparative genomics and phylogenomics, molecular modeling and simulation, pattern discovery and classification, computational proteomics, population genetics, data mining and visualization, software tools and applications.

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Table of contents (29 papers)

  1. Cloud Computing for De Novo Metagenomic Sequence Assembly

    • Xuan Guo, Xiaojun Ding, Yu Meng, Yi Pan
    Pages 185-198

  2. Protein Closed Loop Prediction from Contact Probabilities

    • Liang Ding, Joseph Robertson, Russell L. Malmberg, Liming Cai
    Pages 199-210

  3. A Graph Approach to Bridge the Gaps in Volumetric Electron Cryo-microscopy Skeletons

    • Kamal Al Nasr, Chunmei Liu, Mugizi Robert Rwebangira, Legand L. Iii Burge
    Pages 211-223

  4. Measure the Semantic Similarity of GO Terms Using Aggregate Information Content

    • Xuebo Song, Lin Li, Pradip K. Srimani, Philip S. Yu, James Z. Wang
    Pages 224-236

  5. Scalable and Versatile k-mer Indexing for High-Throughput Sequencing Data

    • Niko Välimäki, Eric Rivals
    Pages 237-248

  6. POMAGO : Multiple Genome-Wide Alignment Tool for Bacteria

    • Nicolas Wieseke, Marcus Lechner, Marcus Ludwig, Manja Marz
    Pages 249-260

  7. Effect of Incomplete Lineage Sorting on Tree-Reconciliation-Based Inference of Gene Duplication

    • Yu Zheng, Louxin Zhang
    Pages 261-272

  8. Ellipsoid-Weighted Protein Conformation Alignment

    • Hyuntae Na, Guang Song
    Pages 273-285

  9. Construction of Uncertain Protein-Protein Interaction Networks and Its Applications

    • Bihai Zhao, Jianxin Wang, Fang-Xiang Wu, Yi Pan
    Pages 286-297

  10. Does Accurate Scoring of Ligands against Protein Targets Mean Accurate Ranking?

    • Hossam M. Ashtawy, Nihar R. Mahapatra
    Pages 298-310

  11. Back Matter

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Other volumes

  1. Bioinformatics Research and Applications

Editors and Affiliations

  • Computer Science, Georgia State University, Atlanta, USA

    Zhipeng Cai

  • Computer Science, Iowa State University, Ames, USA

    Oliver Eulenstein

  • Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, USA

    Daniel Janies

  • Physiology and Neurobiology, University of Connecticut, Storrs, USA

    Daniel Schwartz

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