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Protein Folding

Methods and Protocols

  • Book
  • © 2022

Overview

Editors:
  1. Victor Muñoz

    1. Department of Bioengineering and Center for Cellular and Biomolecular Machines, University of California, Merced, Merced, USA

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  • Includes cutting-edge methods and protocols
  • Provides step-by-step detail essential for reproducible result
  • Contains key notes and implementation advice from the experts

Part of the book series: Methods in Molecular Biology (MIMB, volume 2376)

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Table of contents (23 protocols)

  1. Molecular Simulations

    1. Coarse-Grained Simulations of Protein Folding: Bridging Theory and Experiments

      • Vinícius G. Contessoto, Vinícius M. de Oliveira, Vitor B. P. Leite
      Pages 303-315

    2. Analysis of Molecular Dynamics Simulations of Protein Folding

      • Robert B. Best
      Pages 317-329

    3. Atomistic Simulations of Thermal Unfolding

      • Angel E. Garcia
      Pages 331-341

    4. Molecular Simulations of Intrinsically Disordered Proteins and Their Binding Mechanisms

      • Xiakun Chu, Suhani Nagpal, Victor Muñoz
      Pages 343-362

  2. Prediction Methods

    1. Front Matter

      Pages 363-363
      Download chapter PDF

    2. Prediction of Folding and Unfolding Rates of Proteins with Simple Models

      • David De Sancho, Victor Muñoz
      Pages 365-372

    3. Predicting and Simulating Mutational Effects on Protein Folding Kinetics

      • Athi N. Naganathan
      Pages 373-386

    4. Localization of Energetic Frustration in Proteins

      • A. Brenda Guzovsky, Nicholas P. Schafer, Peter G. Wolynes, Diego U. Ferreiro
      Pages 387-398

    5. Modeling the Structure, Dynamics, and Transformations of Proteins with the UNRES Force Field

      • Adam K. Sieradzan, Cezary Czaplewski, Paweł Krupa, Magdalena A. Mozolewska, Agnieszka S. Karczyńska, Agnieszka G. Lipska et al.
      Pages 399-416

  3. Back Matter

    Pages 417-419
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Keywords

About this book

This volume provides comprehensive protocols on experimental and computational methods that are used to study probe protein folding reactions and mechanisms. Chapters divided into five parts detail protein engineering, protein chemistry, experimental approaches to investigate the thermodynamics and kinetics of protein folding transitions, probe protein folding at the single molecule, analysis and interpretation of computer simulations, procedures and tools for the prediction of protein folding properties. Written in the format of the highly successful Methods in Molecular Biology series, each chapter includes an introduction to the topic, lists necessary materials and reagents, includes tips on troubleshooting and known pitfalls, and step-by-step, readily reproducible protocols.

 

Authoritative and cutting-edge, Protein Folding: Methods and Protocols aims to be a useful practical guide to researches to help further their study in this field.

Editors and Affiliations

  • Department of Bioengineering and Center for Cellular and Biomolecular Machines, University of California, Merced, Merced, USA

    Victor Muñoz

Bibliographic Information

  • Book Title: Protein Folding

  • Book Subtitle: Methods and Protocols

  • Editors: Victor Muñoz

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-0716-1716-8

  • Publisher: Humana New York, NY

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media, LLC, part of Springer Nature 2022

  • Hardcover ISBN: 978-1-0716-1715-1Published: 30 November 2021

  • Softcover ISBN: 978-1-0716-1718-2Published: 30 November 2022

  • eBook ISBN: 978-1-0716-1716-8Published: 30 November 2021

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XI, 419

  • Number of Illustrations: 78 b/w illustrations, 78 illustrations in colour

  • Topics: Protein Science

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