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  • Book
  • © 2015

Computational and Statistical Epigenomics

  • Introduces computational and statistical tools needed for a successful translation from bench to bedside
  • A special focus on DNA methylation data
  • Covers the application of these tools
  • Includes supplementary material: sn.pub/extras

Part of the book series: Translational Bioinformatics (TRBIO, volume 7)

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Table of contents (9 chapters)

  1. Front Matter

    Pages i-v
  2. Normalization and Analysis Methods for DNA Methylation and ChIP-Seq Data

    1. Front Matter

      Pages 1-1
    2. Introduction to Data Types in Epigenomics

      • Francesco Marabita, Jesper Tegnér, David Gomez-Cabrero
      Pages 3-34
    3. DNA Methylation and Cell-Type Distribution

      • E. Andrés Houseman
      Pages 35-50
    4. Model-Based Clustering of DNA Methylation Array Data

      • Devin C. Koestler, E. Andrés Houseman
      Pages 91-123
  3. Integrative and Medical Epigenomics

    1. Front Matter

      Pages 125-125
    2. Integrative Epigenomics

      • Ming Su, Xiaoyang Dou, Hao Cheng, Jing-Dong J. Han
      Pages 127-139
    3. Towards a Mechanistic Understanding of Epigenetic Dynamics

      • Jens Przybilla, Thimo Rohlf, Joerg Galle
      Pages 141-160
    4. Systems Epigenomics and Applications to Ageing and Cancer

      • Andrew E. Teschendorff
      Pages 161-185
    5. Epigenomic Biomarkers for the Advance of Personalized Medicine

      • Jesus Mendez-Gonzalez, Juan Sandoval
      Pages 187-217

About this book

This book introduces the reader to modern computational and statistical tools for translational epigenomics research. Over the last decade, epigenomics has emerged as a key area of molecular biology, epidemiology and genome medicine. Epigenomics not only offers us a deeper understanding of fundamental cellular biology, but also provides us with the basis for an improved understanding and management of complex diseases. From novel biomarkers for risk prediction, early detection, diagnosis and prognosis of common diseases, to novel therapeutic strategies, epigenomics is set to play a key role in the personalized medicine of the future. In this book we introduce the reader to some of the most important computational and statistical methods for analyzing epigenomic data, with a special focus on DNA methylation. Topics include normalization, correction for cellular heterogeneity, batch effects, clustering, supervised analysis and integrative methods for systems epigenomics. This book will be of interest to students and researchers in bioinformatics, biostatistics, biologists and clinicians alike.

Dr. Andrew E. Teschendorff is Head of the Computational Systems Genomics Lab at the CAS-MPG Partner Institute for Computational Biology, Shanghai, China, as well as an Honorary Research Fellow at the UCL Cancer Institute, University College London, UK.

Reviews

“This volume in the Translational Bioinformatics series introduces modern computational and statistical tools for translational epigenomic research with a special focus on DNA methylation. … This is a valuable resource for students, clinicians, and researchers who wish to understand the basics of modern computational and statistical tools for translational epigenomics research. The analytical, storage-related, and interpretive methods discussed in this book hold great promise in helping improve prediction, early diagnosis, severity monitoring, therapeutic effect, and prognosis of human diseases.” (Pooja Sethi, Doody’s Book Reviews, July, 2015)

Editors and Affiliations

  • CAS Key Laboratory of Computational Biology, Chinese Academy of Sciences and Max-Planck Gesellschaft Partner, Institute for Computational Biology, Shanghai, China

    Andrew E. Teschendorff

Bibliographic Information

Buy it now

Buying options

eBook USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access