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  • © 2017

Hydrocarbon and Lipid Microbiology Protocols

Meso- and Microcosms

  • Offers readily reproducible, step-by-step laboratory methods
  • Provides helpful tips and tricks to complement the protocols
  • Includes troubleshooting advice
  • Features practical laboratory guidelines to promote successful results

Part of the book series: Springer Protocols Handbooks (SPH)

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Table of contents (12 protocols)

  1. Front Matter

    Pages i-x
  2. Introduction: Mesocosms and Microcosms

    • Roger C. Prince
    Pages 1-13
  3. Preparing the Hydrocarbon/Crude Oil

    • Roger C. Prince, Josh D. Butler, Gail E. Bragin, Thomas F. Parkerton, Aaron D. Redman, Barbara A. Kelley et al.
    Pages 15-32
  4. High Pressure Cultivation of Hydrocarbonoclastic Aerobic Bacteria

    • Francesco Smedile, Violetta La Cono, Maria Genovese, Giovacchino Ruggeri, Renata Denaro, Francesca Crisafi et al.
    Pages 33-49
  5. In Vitro High-Pressure Incubation and Activity Measurement of Deep-Sea Methanogenic Archaea

    • Eiji Tasumi, Katsunori Yanagawa, Junichi Miyazaki, Ken Takai
    Pages 51-64
  6. Mudflat Benthic Spill Simulations

    • Cristiana Cravo-Laureau, Ronan Jézéquel, Franck Gilbert, Philippe Cuny, Robert Duran
    Pages 79-89
  7. Protocols for Subtidal and Deep-Sea Benthic Oil Spill Simulations

    • Philippe Cuny, Vincent Grossi, Cécile Militon, Christian Tamburini, Georges Stora, Franck Gilbert
    Pages 91-102
  8. Simulation of Anoxic–Oxic Oscillations in Crude Oil-Degrading Bioreactors

    • Fanny Terrisse, Robert Duran, Isabelle Vitte, Cristiana Cravo-Laureau
    Pages 103-110
  9. Erratum to: High Pressure Cultivation of Hydrocarbonoclastic Aerobic Bacteria

    • Francesco Smedile, Violetta La Cono, Maria Genovese, Giovacchino Ruggeri, Renata Denaro, Francesca Crisafi et al.
    Pages 173-173

About this book

This Volume describes methods for simulating natural environments by using reproducible and controllable meso- and microcosm experiments to analyse hydrocarbon-degrading microorganisms and to test hypotheses. It presents important aspects of the preparation of experimental set-ups, hydrocarbon application and sampling, and features protocols for experiments with different types of samples, such as biofilms, aquatic systems (e.g. groundwater, streams), and sediments, including oscillating oxic-anoxic mesocosms, as well as for in-situ experimentation in subtidal and deep sediments. Two chapters are dedicated to cultivation under high-pressure conditions, and several chapters include protocols for processing samples for downstream chemical, microbial or activity analyses. Several of the approaches presented are generic and will benefit anyone embarking on designing meso- and microcosm experiments. <

Hydrocarbon and Lipid Microbiology Protocols

There are tens of thousands of structurally different hydrocarbons, hydrocarbon derivatives and lipids, and a wide array of these molecules are required for cells to function. The global hydrocarbon cycle, which is largely driven by microorganisms, has a major impact on our environment and climate. Microbes are responsible for cleaning up the environmental pollution caused by the exploitation of hydrocarbon reservoirs and will also be pivotal in reducing our reliance on fossil fuels by providing biofuels, plastics and industrial chemicals. Gaining an understanding of the relevant functions of the wide range of microbes that produce, consume and modify hydrocarbons and related compounds will be key to responding to these challenges. This comprehensive collection of current and emerging protocols will facilitate acquisition of this understanding and exploitation of useful activities of such microbes.








Editors and Affiliations

  • School of Biological Sciences, University of Essex, Colchester, United Kingdom

    Terry J. McGenity

  • Braunschweig, Germany

    Kenneth N. Timmis

  • Dept. Biologia, University of the Balearic Islands and Mediterranean Institute for Advanced Studies (IMEDEA, UIB-CSIC), Palma de Mallorca, Spain

    Balbina Nogales

Bibliographic Information

  • Book Title: Hydrocarbon and Lipid Microbiology Protocols

  • Book Subtitle: Meso- and Microcosms

  • Editors: Terry J. McGenity, Kenneth N. Timmis, Balbina Nogales

  • Series Title: Springer Protocols Handbooks

  • DOI: https://doi.org/10.1007/978-3-662-53108-2

  • Publisher: Springer Berlin, Heidelberg

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer-Verlag GmbH Germany, part of Springer Nature 2017

  • Hardcover ISBN: 978-3-662-53107-5Published: 26 June 2017

  • Softcover ISBN: 978-3-662-57112-5Published: 15 August 2018

  • eBook ISBN: 978-3-662-53108-2Published: 08 June 2017

  • Series ISSN: 1949-2448

  • Series E-ISSN: 1949-2456

  • Edition Number: 1

  • Number of Pages: X, 173

  • Number of Illustrations: 13 b/w illustrations, 27 illustrations in colour

  • Topics: Microbiology, Biochemical Engineering

Buy it now

Buying options

eBook USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access