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  • Conference proceedings
  • © 2011

5th International Conference on Practical Applications of Computational Biology & Bioinformatics

  • Recent research on Practical Applications of Computational Biology and Bioinformatics
  • Proceedings of the 5th International Conference on Practical Applications of Computational Biology & Bioinformatics, held at University of Salamanca (Spain), 6-8th April, 2011
  • Written by leading experts in the field

Part of the book series: Advances in Intelligent and Soft Computing (AINSC, volume 93)

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Table of contents (50 papers)

  1. Front Matter

  2. Applications

    1. Riskoweb: Web-Based Genetic Profiling to Complex Disease Using Genome-Wide SNP Markers

      • Sergio Torres-Sánchez, Rosana Montes-Soldado, Nuria Medina-Medina, Andrés R. Masegosa, María Mar Abad-Grau
      Pages 1-8
    2. MC64: A Web Platform to Test Bioinformatics Algorithms in a Many-Core Architecture

      • Francisco José Esteban, David Díaz, Pilar Hernández, Juan Antonio Caballero, Gabriel Dorado, Sergio Gálvez
      Pages 9-16
    3. Integrating Medical Patient Data with Family Trees to Improve the Quality of Information

      • Eliana Sousa, Tiago Jesus, Lina Neves, Mónica Costa, Fernando Reinaldo Ribeiro, José Carlos Metrôlho et al.
      Pages 17-22
    4. Peptidase Detection and Classification Using Enhanced Kernel Methods with Feature Selection

      • Lionel Morgado, Carlos Pereira, Paula Veríssimo, António Dourado
      Pages 23-30
    5. An Image Processing Application for Quantification of Protein Aggregates in Caenorhabditis Elegans

      • Andreia Teixeira-Castro, Nuno Dias, Pedro Rodrigues, João Filipe Oliveira, Nuno F. Rodrigues, Patrícia Maciel et al.
      Pages 31-38
    6. Workflows with Model Selection: A Multilocus Approach to Phylogenetic Analysis

      • Jorge Álvarez, Roberto Blanco, Elvira Mayordomo
      Pages 39-47
    7. Baiacu: A Tool for the Visual Analysis of the Saccharomyces Cerevisiae Regulatory Network

      • Ricardo S. Aires, João A. Carriço, Alexandre P. Francisco, Sara C. Madeira
      Pages 49-56
    8. BBMS + +  – Basic Bioinformatics Meta-searcher

      • Márcio S. Carocho, Sérgio Deusdado
      Pages 57-62
    9. Effective Parallelization of Non-bonded Interactions Kernel for Virtual Screening on GPUs

      • Ginés D. Guerrero, Horacio Pérez-Sánchez, Wolfgang Wenzel, José M. Cecilia, José M. García
      Pages 63-69
    10. Tracking B Cells from Two-Photon Microscopy Images Using Sequential Monte Carlo

      • David Olivieri, Ivan Gomez Conde, Jose Faro
      Pages 71-78
    11. An Intuitive Workflow to Retrieve Somatic Mutations in Next Generation Sequencing Studies

      • Daniel Glez-Peña, Miguel Reboiro-Jato, Florentino Fdez-Riverola, David G. Pisano, Gonzalo Gómez-López
      Pages 83-86
    12. Building a GATK-Based Tool for Methylation Analysis in Next-Generation Bisulfite Sequencing Experiments

      • Daniel Glez-Peña, Osvaldo Graña, Florentino Fdez-Riverola, David G. Pisano
      Pages 87-91
    13. EPIQuest: A Multiuser and Multiproject Web Tool to Build Online Forms for Biomedical Studies

      • M. Márquez-Cid, G. Comesaña, R. Milne, G. Andrés, N. Malats, D. Pisano
      Pages 93-98
    14. Building Proteomics Applications with the AIBench Application Framework

      • Miguel Reboiro-Jato, Daniel Glez-Peña, José R. Méndez-Reboredo, Hugo M. Santos, Ricardo J. Carreira, José L. Capelo et al.
      Pages 99-107
    15. Neurohand Solving the Inverse Cinematic of an Anthropomorphic Arm

      • Marina Beltrán-Blanco, Javier Molina-Vilaplana, José Luis Muñoz-Lozano, Juan López-Coronado
      Pages 109-115
  3. Clinical & Diagnosis & Drugs

    1. Modelling of Tirapazamine Effects on Solid Tumour Morphology

      • N. Kazmi, M. A. Hossain, R. M. Phillips
      Pages 125-132
    2. MOGA-Based Multi-drug Optimisation for Cancer Chemotherapy

      • S. Algoul, M. S. Alam, K. Sakib, M. A. Hossain, M. A. A. Majumder
      Pages 133-140

About this book

The growth in the Bioinformatics and Computational Biology fields over the last few years has been remarkable and the trend is to increase its pace. In fact, the need for computational techniques that can efficiently handle the huge amounts of data produced by the new experimental techniques in Biology is still increasing driven by new advances in Next Generation Sequencing, several types of the so called omics data and image acquisition, just to name a few. The analysis of the datasets that produces and its integration call for new algorithms and approaches from fields such as Databases, Statistics, Data Mining, Machine Learning, Optimization, Computer Science and Artificial Intelligence. Within this scenario of increasing data availability, Systems Biology has also been emerging as an alternative to the reductionist view that dominated biological research in the last decades. Indeed, Biology is more and more a science of information requiring tools from the computational sciences. In the last few years, we have seen the surge of a new generation of interdisciplinary scientists that have a strong background in the biological and computational sciences. In this context, the interaction of researchers from different scientific fields is, more than ever, of foremost importance boosting the research efforts in the field and contributing to the education of a new generation of Bioinformatics scientists. PACBB‘11 hopes to contribute to this effort promoting this fruitful interaction. PACBB'11 technical program included 50 papers from a submission pool of 78 papers spanning many different sub-fields in Bioinformatics and Computational Biology. Therefore, the conference will certainly have promoted the interaction of scientists from diverse research groups and with a distinct background (computer scientists, mathematicians, biologists). The scientific content will certainly be challenging andwill promote the improvement of the work that is being developed by each of the participants.

 

Editors and Affiliations

  • Dep. Informática / CCTC, Universidade do Minho, Braga, Portugal

    Miguel P. Rocha

  • Department of Computing Science and Control Faculty of Science, University of Salamanca, Salamanca, Spain

    Juan M. Corchado Rodríguez

  • Edificio Politécnico, ESEI: Escuela Superior de Ingeniería Informática, Ourense, Spain

    Florentino Fdez-Riverola

  • Structural Biology and BioComputing Programme (CNIO), Spanish National Cancer Research Centre, Madrid, Spain

    Alfonso Valencia

Bibliographic Information

  • Book Title: 5th International Conference on Practical Applications of Computational Biology & Bioinformatics

  • Editors: Miguel P. Rocha, Juan M. Corchado Rodríguez, Florentino Fdez-Riverola, Alfonso Valencia

  • Series Title: Advances in Intelligent and Soft Computing

  • DOI: https://doi.org/10.1007/978-3-642-19914-1

  • Publisher: Springer Berlin, Heidelberg

  • eBook Packages: Engineering, Engineering (R0)

  • Copyright Information: Springer Berlin Heidelberg 2011

  • Softcover ISBN: 978-3-642-19913-4Published: 04 March 2011

  • eBook ISBN: 978-3-642-19914-1Published: 09 March 2011

  • Series ISSN: 1867-5662

  • Series E-ISSN: 1867-5670

  • Edition Number: 1

  • Number of Pages: XVI, 400

  • Number of Illustrations: 49 b/w illustrations, 89 illustrations in colour

  • Topics: Computational Intelligence, Artificial Intelligence, Bioinformatics

Buy it now

Buying options

eBook USD 169.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access