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Pattern Recognition in Bioinformatics

4th IAPR International Conference, PRIB 2009, Sheffield, UK, September 7-9, 2009, Proceedings

  • Conference proceedings
  • © 2009

Overview

Editors:
  1. Visakan Kadirkamanathan

    1. Department of Automatic Control and Systems Engineering, University of Sheffield, Sheffield, UK

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  2. Guido Sanguinetti

    1. Department of Computer Science and Department of Chemical and Process Engineering, University of Sheffield, Sheffield, UK

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  3. Mark Girolami

    1. University of Glasgow, Department of Computing Science, Sir Alwyn Williams Building, Lilybank Gardens, Glasgow, G12 8QQ, UK, and, University of Glasgow, Department of Statistics, 14 University Gardens, Glasgow, G12 8QQ, UK

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  4. Mahesan Niranjan

    1. School of Electronics and Computer Science, University of Southampton, Southampton, UK

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  5. Josselin Noirel

    1. Department of Chemical and Process Engineering, University of Sheffield, Sheffield, UK

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 5780)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: PRIB 2009.

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Table of contents (38 papers)

  1. Front Matter

    Download chapter PDF

  2. Evolutionary Parameters in Sequence Families

    • Said Hassan Ahmed, Tor FlÃ¥
    Pages 1-12

  3. MProfiler: A Profile-Based Method for DNA Motif Discovery

    • Doaa Altarawy, Mohamed A. Ismail, Sahar M. Ghanem
    Pages 13-23

  4. On Utilizing Optimal and Information Theoretic Syntactic Modeling for Peptide Classification

    • Eser Aygün, B. John Oommen, Zehra Cataltepe
    Pages 24-35

  5. Joint Tracking of Cell Morphology and Motion

    • Jierong Cheng, Esther G. L. Koh, Sohail Ahmed, Jagath C. Rajapakse
    Pages 36-45

  6. Multiclass Microarray Gene Expression Analysis Based on Mutual Dependency Models

    • Girija Chetty, Madhu Chetty
    Pages 46-55

  7. An Efficient Convex Nonnegative Network Component Analysis for Gene Regulatory Network Reconstruction

    • Jisheng Dai, Chunqi Chang, Zhongfu Ye, Yeung Sam Hung
    Pages 56-66

  8. Using Higher-Order Dynamic Bayesian Networks to Model Periodic Data from the Circadian Clock of Arabidopsis Thaliana

    • Rónán Daly, Kieron D. Edwards, John S. O’Neill, Stuart Aitken, Andrew J. Millar, Mark Girolami
    Pages 67-78

  9. Sequential Hierarchical Pattern Clustering

    • Bassam Farran, Amirthalingam Ramanan, Mahesan Niranjan
    Pages 79-88

  10. Syntactic Pattern Recognition Using Finite Inductive Strings

    • Paul Fisher, Howard Fisher, Jinsuk Baek, Cleopas Angaye
    Pages 89-101

  11. Evidence-Based Clustering of Reads and Taxonomic Analysis of Metagenomic Data

    • Gianluigi Folino, Fabio Gori, Mike S. M. Jetten, Elena Marchiori
    Pages 102-112

  12. Avoiding Spurious Feedback Loops in the Reconstruction of Gene Regulatory Networks with Dynamic Bayesian Networks

    • Marco Grzegorczyk, Dirk Husmeier
    Pages 113-124

  13. Ligand Electron Density Shape Recognition Using 3D Zernike Descriptors

    • Prasad Gunasekaran, Scott Grandison, Kevin Cowtan, Lora Mak, David M. Lawson, Richard J. Morris
    Pages 125-136

  14. Definition of Valid Proteomic Biomarkers: A Bayesian Solution

    • Keith Harris, Mark Girolami, Harald Mischak
    Pages 137-149

  15. Inferring Meta-covariates in Classification

    • Keith Harris, Lisa McMillan, Mark Girolami
    Pages 150-161

  16. A Multiobjective Evolutionary Algorithm for Numerical Parameter Space Characterization of Reaction Diffusion Systems

    • Tim Hohm, Eckart Zitzler
    Pages 162-174

  17. Knowledge-Guided Docking of WW Domain Proteins and Flexible Ligands

    • Haiyun Lu, Hao Li, Shamima Banu Bte Sm Rashid, Wee Kheng Leow, Yih-Cherng Liou
    Pages 175-186

  18. Distinguishing Regional from Within-Codon Rate Heterogeneity in DNA Sequence Alignments

    • Alexander V. Mantzaris, Dirk Husmeier
    Pages 187-198

  19. A Hybrid Metaheuristic for Biclustering Based on Scatter Search and Genetic Algorithms

    • Juan A. Nepomuceno, Alicia Troncoso, Jesús S. Aguilar–Ruiz
    Pages 199-210

  20. Di-codon Usage for Gene Classification

    • Minh N. Nguyen, Jianmin Ma, Gary B. Fogel, Jagath C. Rajapakse
    Pages 211-221
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  1. Pattern Recognition in Bioinformatics

Keywords

Editors and Affiliations

  • Department of Automatic Control and Systems Engineering, University of Sheffield, Sheffield, UK

    Visakan Kadirkamanathan

  • Department of Computer Science and Department of Chemical and Process Engineering, University of Sheffield, Sheffield, UK

    Guido Sanguinetti

  • University of Glasgow, Department of Computing Science, Sir Alwyn Williams Building, Lilybank Gardens, Glasgow, G12 8QQ, UK, and, University of Glasgow, Department of Statistics, 14 University Gardens, Glasgow, G12 8QQ, UK

    Mark Girolami

  • School of Electronics and Computer Science, University of Southampton, Southampton, UK

    Mahesan Niranjan

  • Department of Chemical and Process Engineering, University of Sheffield, Sheffield, UK

    Josselin Noirel

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