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Research in Computational Molecular Biology

13th Annual International Conference, RECOMB 2009, Tucson, Arizona, USA, May 18-21, 2009, Proceedings

  • Conference proceedings
  • © 2009

Overview

Editors:
  1. Serafim Batzoglou

    1. Computer Science Department, James H. Clark Center, Stanford, USA

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 5541)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: RECOMB 2009.

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Table of contents (36 papers)

  1. Front Matter

    Download chapter PDF

  2. Searching Protein 3-D Structures in Linear Time

    • Tetsuo Shibuya
    Pages 1-15

  3. Optimization-Based Peptide Mass Fingerprinting for Protein Mixture Identification

    • Zengyou He, Chao Yang, Can Yang, Robert Z. Qi, Jason Po-Ming Tam, Weichuan Yu
    Pages 16-30

  4. Boosting Protein Threading Accuracy

    • Jian Peng, Jinbo Xu
    Pages 31-45

  5. New Perspectives on Gene Family Evolution: Losses in Reconciliation and a Link with Supertrees

    • Cedric Chauve, Nadia El-Mabrouk
    Pages 46-58

  6. A Probabilistic Graphical Model for Ab Initio Folding

    • Feng Zhao, Jian Peng, Joe DeBartolo, Karl F. Freed, Tobin R. Sosnick, Jinbo Xu
    Pages 59-73

  7. Topology-Free Querying of Protein Interaction Networks

    • Sharon Bruckner, Falk Hüffner, Richard M. Karp, Ron Shamir, Roded Sharan
    Pages 74-89

  8. Cross Species Expression Analysis of Innate Immune Response

    • Yong Lu, Roni Rosenfeld, Gerard J. Nau, Ziv Bar-Joseph
    Pages 90-107

  9. Haplotype Inference in Complex Pedigrees

    • Bonnie Kirkpatrick, Javier Rosa, Eran Halperin, Richard M. Karp
    Pages 108-120

  10. Storage and Retrieval of Individual Genomes

    • Veli Mäkinen, Gonzalo Navarro, Jouni Sirén, Niko Välimäki
    Pages 121-137

  11. An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations

    • Arvind Ramanathan, Pratul K. Agarwal, Maria Kurnikova, Christopher J. Langmead
    Pages 138-154

  12. Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology

    • Alexandre Donzé, Gilles Clermont, Axel Legay, Christopher J. Langmead
    Pages 155-169

  13. Spatial Clustering of Multivariate Genomic and Epigenomic Information

    • Rami Jaschek, Amos Tanay
    Pages 170-183

  14. How Many Bootstrap Replicates Are Necessary?

    • Nicholas D. Pattengale, Masoud Alipour, Olaf R. P. Bininda-Emonds, Bernard M. E. Moret, Alexandros Stamatakis
    Pages 184-200

  15. A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series

    • Oliver Stegle, Katherine Denby, David L. Wild, Zoubin Ghahramani, Karsten M. Borgwardt
    Pages 201-216

  16. Incorporating Nucleosomes into Thermodynamic Models of Transcription Regulation

    • Tali Raveh-Sadka, Michal Levo, Eran Segal
    Pages 217-217

  17. Combinatorial Algorithms for Structural Variation Detection in High Throughput Sequenced Genomes

    • Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, S. Cenk Sahinalp
    Pages 218-219

  18. Optimizing PCR Assays for DNA Based Cancer Diagnostics

    • Ali Bashir, Qing Lu, Dennis Carson, Benjamin Raphael, Yu-Tsueng Liu, Vineet Bafna
    Pages 220-235

  19. The Multi-State Perfect Phylogeny Problem with Missing and Removable Data: Solutions via Integer-Programming and Chordal Graph Theory

    • Dan Gusfield
    Pages 236-252

  20. COE: A General Approach for Efficient Genome-Wide Two-Locus Epistasis Test in Disease Association Study

    • Xiang Zhang, Feng Pan, Yuying Xie, Fei Zou, Wei Wang
    Pages 253-269
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Other volumes

  1. Research in Computational Molecular Biology

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About this book

This book constitutes the refereed proceedings of the 13th Annual International Conference on Research in Computational Molecular Biology, RECOMB 2009, held in Tucson, Arisona, USA in May 2009. The 37 revised full papers presented were carefully reviewed and selected from 166 submissions. As the top conference in computational molecular biology, RECOMB addresses all current issues in algorithmic, theoretical, and experimental bioinformatics such as molecular sequence analysis, recognition of genes and regulatory elements, molecular evolution, protein structure, structural genomics, gene expression, gene networks, drug design, combinatorial libraries, computational proteomics, as well as structural and functional genomics.

Editors and Affiliations

  • Computer Science Department, James H. Clark Center, Stanford, USA

    Serafim Batzoglou

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