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Advances in Bioinformatics and Computational Biology

Brazilian Symposium on Bioinformatics, BSB 2005, Sao Leopoldo, Brazil, July 27-29, 2005, Proceedings

  • Conference proceedings
  • © 2005

Overview

Editors:
  1. João Carlos Setubal

    1. Department of Computer Science, Virginia Bioinformatics Institute and Virginia Polytechnic Institute and State University, Blacksburg, USA

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  2. Sergio Verjovski-Almeida

    1. Instituto de Quimica, Departamento de Bioquimica, Universidade de Sao Paulo, Sao Paulo, Brazil

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 3594)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: BSB 2005.

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Table of contents (35 papers)

  1. Front Matter

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  2. Invited Papers

    1. Differential Gene Expression in the Auditory System

      • Irene S. Gabashvili, Richard J. Carter, Peter Markstein, Anne B. S. Giersch
      Pages 1-8

    2. Searching for Non-coding RNA

      • Walter L. Ruzzo
      Pages 9-10

    3. Cyberinfrastructure for PathoSystems Biology

      • Bruno W. S. Sobral
      Pages 11-27

    4. Analysis of Genomic Tiling Microarrays for Transcript Mapping and the Identification of Transcription Factor Binding Sites

      • Joel Rozowsky, Paul Bertone, Thomas Royce, Sherman Weissman, Michael Snyder, Mark Gerstein
      Pages 28-29

  3. Full Papers

    1. Perturbing Thermodynamically Unfeasible Metabolic Networks

      • R. Nigam, S. Liang
      Pages 30-41

    2. Protein Cellular Localization with Multiclass Support Vector Machines and Decision Trees

      • Ana Carolina Lorena, André C. P. L. F. de Carvalho
      Pages 42-53

    3. Combining One-Class Classifiers for Robust Novelty Detection in Gene Expression Data

      • Eduardo J. Spinosa, André C. P. L. F. de Carvalho
      Pages 54-64

    4. Evaluation of the Contents of Partitions Obtained with Clustering Gene Expression Data

      • Katti Faceli, André C. P. L. F. de Carvalho, Marcílio C. P. de Souto
      Pages 65-76

    5. Machine Learning Techniques for Predicting Bacillus subtilis Promoters

      • Meika I. Monteiro, Marcilio C. P. de Souto, Luiz M. G. Gonçalves, Lucymara F. Agnez-Lima
      Pages 77-84

    6. An Improved Hidden Markov Model Methodology to Discover Prokaryotic Promoters

      • Adriana Neves dos Reis, Ney Lemke
      Pages 85-94

    7. Modeling and Property Verification of Lactose Operon Regulation

      • Marcelo Cezar Pinto, Luciana Foss, José Carlos Merino Mombach, Leila Ribeiro
      Pages 95-106

    8. YAMONES: A Computational Architecture for Molecular Network Simulation

      • Guilherme Balestieri Bedin, Ney Lemke
      Pages 107-117

    9. Structure Prediction and Docking Studies of Chorismate Synthase from Mycobacterium Tuberculosis

      • Cláudia Lemelle Fernandes, Diógenes Santiago Santos, Luiz Augusto Basso, Osmar Norberto de Souza
      Pages 118-127

    10. Analysis of the Effects of Multiple Sequence Alignments in Protein Secondary Structure Prediction

      • Georgios Joannis Pappas Jr., Shankar Subramaniam
      Pages 128-140

    11. Tests of Automatic Annotation Using KOG Proteins and ESTs from 4 Eukariotic Organisms

      • Maurício de Alvarenga Mudado, Estevam Bravo-Neto, José Miguel Ortega
      Pages 141-152

    12. Diet as a Pressure on the Amino Acid Content of Proteomes

      • Francisco Prosdocimi, J. Miguel Ortega
      Pages 153-159

    13. A Method for Comparing Three Genomes

      • Guilherme P. Telles, Marcelo M. Brigido, Nalvo F. Almeida, Carlos J. M. Viana, Daniel A. S. Anjos, Maria Emilia M. T. Walter
      Pages 160-169

    14. Comparison of Genomic DNA to cDNA Alignment Methods

      • Miguel Galves, Zanoni Dias
      Pages 170-180

    15. Segmentation and Centromere Locating Methods Applied to Fish Chromosomes Images

      • Elaine Ribeiro de Faria, Denise Guliato, Jean Carlo de Sousa Santos
      Pages 181-189
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Other volumes

  1. Advances in Bioinformatics and Computational Biology

Keywords

About this book

This book constitutes the refereed proceedings of the Brazilian Symposium on Bioinformatics, BSB 2005, held in Sao Leopoldo, Brazil in July 2005.

The 15 revised full papers and 10 revised extended abstracts presented together with 3 invited papers were carefully reviewed and selected from 55 submissions. The papers address a broad range of current topics in computational biology and bioinformatics.

Editors and Affiliations

  • Department of Computer Science, Virginia Bioinformatics Institute and Virginia Polytechnic Institute and State University, Blacksburg, USA

    João Carlos Setubal

  • Instituto de Quimica, Departamento de Bioquimica, Universidade de Sao Paulo, Sao Paulo, Brazil

    Sergio Verjovski-Almeida

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