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Bioinformatics Research and Applications

13th International Symposium, ISBRA 2017, Honolulu, HI, USA, May 29 – June 2, 2017, Proceedings

  • Conference proceedings
  • © 2017

Overview

Editors:
  1. Zhipeng Cai

    1. Georgia State University, Atlanta, USA

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    You can also search for this editor in PubMed   Google Scholar

  2. Ovidiu Daescu

    1. University of Texas at Dallas, Richardson, USA

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    You can also search for this editor in PubMed   Google Scholar

  3. Min Li

    1. Central South University, Changsha, China

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    You can also search for this editor in PubMed   Google Scholar

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 10330)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: ISBRA 2017.

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Table of contents (46 papers)

  1. Front Matter

    Pages I-LXVIII
    Download chapter PDF

  2. Prediction of Time to Tumor Recurrence in Ovarian Cancer: Comparison of Three Sparse Regression Methods

    • Mahsa Lotfi, Burook Misganaw, Mathukumalli Vidyasagar
    Pages 1-11

  3. Histopathological Diagnosis for Viable and Non-viable Tumor Prediction for Osteosarcoma Using Convolutional Neural Network

    • Rashika Mishra, Ovidiu Daescu, Patrick Leavey, Dinesh Rakheja, Anita Sengupta
    Pages 12-23

  4. Relating Diseases Based on Disease Module Theory

    • Peng Ni, Min Li, Ping Zhong, Guihua Duan, Jianxin Wang, Yaohang Li et al.
    Pages 24-33

  5. Reconstructing One-Articulated Networks with Distance Matrices

    • Kuang-Yu Chang, Yun Cui, Siu-Ming Yiu, Wing-Kai Hon
    Pages 34-45

  6. Computational Methods for the Prediction of Drug-Target Interactions from Drug Fingerprints and Protein Sequences by Stacked Auto-Encoder Deep Neural Network

    • Lei Wang, Zhu-Hong You, Xing Chen, Shi-Xiong Xia, Feng Liu, Xin Yan et al.
    Pages 46-58

  7. Analysis of Paired miRNA-mRNA Microarray Expression Data Using a Stepwise Multiple Linear Regression Model

    • Yiqian Zhou, Rehman Qureshi, Ahmet Sacan
    Pages 59-70

  8. IsoTree: De Novo Transcriptome Assembly from RNA-Seq Reads

    • Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu
    Pages 71-83

  9. Unfolding the Protein Surface for Pattern Matching

    • Heng Yang, Chunyu Zhao, Ahmet Sacan
    Pages 84-95

  10. Estimation of Rates of Reactions Triggered by Electron Transfer in Top-Down Mass Spectrometry

    • Michał Aleksander Ciach, Mateusz Krzysztof Łącki, Błażej Miasojedow, Frederik Lermyte, Dirk Valkenborg, Frank Sobott et al.
    Pages 96-107

  11. Construction of Protein Backbone Fragments Libraries on Large Protein Sets Using a Randomized Spectral Clustering Algorithm

    • Wessam Elhefnawy, Min Li, Jianxin Wang, Yaohang Li
    Pages 108-119

  12. Mapping Paratope and Epitope Residues of Antibody Pembrolizumab via Molecular Dynamics Simulation

    • Wenping Liu, Guangjian Liu
    Pages 120-127

  13. A New 2-Approximation Algorithm for rSPR Distance

    • Zhi-Zhong Chen, Youta Harada, Lusheng Wang
    Pages 128-139

  14. An SIMD Algorithm for Wraparound Tandem Alignment

    • Joshua Loving, John P. Scaduto, Gary Benson
    Pages 140-149

  15. PhAT-QTL: A Phase-Aware Test for QTL Detection

    • Meena Subramaniam, Noah Zaitlen, Jimmie Ye
    Pages 150-161

  16. Unbiased Taxonomic Annotation of Metagenomic Samples

    • Bruno Fosso, Graziano Pesole, Francesc Rosselló, Gabriel Valiente
    Pages 162-173

  17. Genetic Algorithm Based Beta-Barrel Detection for Medium Resolution Cryo-EM Density Maps

    • Albert Ng, Dong Si
    Pages 174-185

  18. Mining K-mers of Various Lengths in Biological Sequences

    • Jingsong Zhang, Jianmei Guo, Xiaoqing Yu, Xiangtian Yu, Weifeng Guo, Tao Zeng et al.
    Pages 186-195

  19. Coestimation of Gene Trees and Reconciliations Under a Duplication-Loss-Coalescence Model

    • Bo Zhang, Yi-Chieh Wu
    Pages 196-210

  20. A Median Solver and Phylogenetic Inference Based on DCJ Sorting

    • Ruofan Xia, Jun Zhou, Lingxi Zhou, Bing Feng, Jijun Tang
    Pages 211-222
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  1. Bioinformatics Research and Applications

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About this book

This book constitutes the proceedings of the 13th International Symposium on Bioinformatics Research and Applications, ISBRA 2017, held in Honolulu, HI, USA, in May/June 2017.

The 27 full papers presented together with 18 short papers and 24 invited abstracts were carefully reviewed and selected from 131 submissions. They cover topics such as: biomarker discovery; biomedical databases and data integration; biomedical text mining and ortologies; biomolecular imaging; comparative genomics; computational genetic epidemiology; computational proteomics; data mining and visualization; gene expression analysis; genome analysis; high-performance bio-computing; metagenomics; molecular evolution; molecular modelling and simulation; next-generation sequencing data analysis; pattern discovery and classification; population genetics; software tools and applications; structural biology; and systems biology.

Editors and Affiliations

  • Georgia State University, Atlanta, USA

    Zhipeng Cai

  • University of Texas at Dallas, Richardson, USA

    Ovidiu Daescu

  • Central South University, Changsha, China

    Min Li

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