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  • © 2011

Antiviral RNAi

Concepts, Methods, and Applications

Editors:

  • Includes cutting-edge methods and protocols
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts
  • Includes supplementary material: sn.pub/extras

Part of the book series: Methods in Molecular Biology (MIMB, volume 721)

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Table of contents (26 protocols)

  1. Front Matter

    Pages i-xi
  2. General Introduction

    1. Front Matter

      Pages 1-1
    2. Defense and Counterdefense in the RNAi-Based Antiviral Immune System in Insects

      • Joël T. van Mierlo, Koen W. R. van Cleef, Ronald P. van Rij
      Pages 3-22
    3. RNAi and Cellular miRNAs in Infections by Mammalian Viruses

      • Joost Haasnoot, Ben Berkhout
      Pages 23-41
    4. Viral miRNAs

      • Karlie Plaisance-Bonstaff, Rolf Renne
      Pages 43-66
    5. Progress in RNAi-Based Antiviral Therapeutics

      • Jiehua Zhou, John J. Rossi
      Pages 67-75
    6. Chemical Modification of Small Interfering RNA

      • Jesper B. Bramsen, Jørgen Kjems
      Pages 77-103
  3. Viral Small RNAs

    1. Front Matter

      Pages 105-105
    2. Viral Small RNA Cloning and Sequencing

      • Valérie Gausson, Maria-Carla Saleh
      Pages 107-122
    3. Computational Prediction of Viral miRNAs

      • Adam Grundhoff
      Pages 143-152
    4. Detection of Viral microRNAs by Northern Blot Analysis

      • Lydia V. McClure, Yao-Tang Lin, Christopher S. Sullivan
      Pages 153-171
    5. Detection of Viral microRNA with S1 Nuclease Protection Assay

      • Matthias John, Sébastien Pfeffer
      Pages 173-182
    6. Characterization of RISC-Associated Adenoviral Small RNAs

      • Ning Xu, Göran Akusjärvi
      Pages 183-198
  4. RNAi-Based Antiviral Defense

    1. Front Matter

      Pages 199-199
  5. RNAi-based Antiviral Defense

    1. Identification of Viral Suppressors of RNAi by a Reporter Assay in Drosophila S2 Cell Culture

      • Koen W. R. van Cleef, Joël T. van Mierlo, Marius van den Beek, Ronald P. van Rij
      Pages 201-213
    2. Dicer Assay in Drosophila S2 Cell Extract

      • Baojun Yang, Hongwei Li
      Pages 215-229
    3. Slicer Activity in Drosophila melanogaster S2 Extract

      • Arabinda Nayak, Raul Andino
      Pages 231-244
    4. Gel Mobility Shift Assays for RNA Binding Viral RNAi Suppressors

      • Tibor Csorba, József Burgyán
      Pages 245-252
    5. dsRNA Uptake in Adult Drosophila

      • Benjamin Obadia, Maria-Carla Saleh
      Pages 253-263

About this book

Viruses and RNAi share an intricate relationship at many levels. RNAi is an important antiviral defense mechanism in plants and invertebrates, microRNAs – of viral or cellular origin – affect many aspects of virus biology, and replication of many, if not all, mammalian viruses can be suppressed by RNAi. Antiviral RNAi: Concepts, Methods, and Applications provides a collection of protocols for the analysis of viral small RNAs and natural antiviral RNAi responses as well as for the development and optimization of RNAi-based antiviral drugs. As RNAi is a central regulatory mechanism in the cell, the methods in this volume can also be applied out of the context of a virus infection. Divided into five convenient parts, this detailed volume reviews important basic concepts in the field of antiviral RNAi, provides experimental and bio-informatic tools for the analysis of small silencing RNAs, covers methods to biochemically dissect RNAi-based antiviral defense and viral counter-defense mechanisms, describes methods for the design, expression, and delivery of therapeutic antiviral siRNAs, and finally presents genome-wide RNAi approaches for the identification of factors involved in virus replication. Written in the highly successful Methods in Molecular Biology™ series format, chapters contain introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and notes on troubleshooting and avoiding known pitfalls.

Authoritative and accessible, Antiviral RNAi: Concepts, Methods, and Applications serves as an ideal guide for both novice and experienced researchers alike striving to dissect the role of RNAi in the viral life cycle or to further boost the development of novel therapeutics and experimental tools based on RNAi technology.

Reviews

From the reviews:

“This well-illustrated book details the necessary protocols for the analysis of viral small RNAs and natural antiviral RNAi responses as well as the development and optimization of RNAi-based antiviral drugs. The book is intended for both novice and experienced researchers … . It also will be of immense help to graduate students, physicians who treat patients with infectious diseases, and other researchers interested in the field of antiviral RNAi. … a well-illustrated and authoritative resource on important basic concepts in the field of antiviral RNAi.” (Omer Iqbal, Doody’s Review Service, July, 2011)

Editors and Affiliations

  • Inst. for Infection, Inflammation & Immu, Dept. Medical Microbiology, Radboud Univ.Nijmegen Medical Ctr, Nijmegen, Netherlands

    Ronald P. Rij

Bibliographic Information

  • Book Title: Antiviral RNAi

  • Book Subtitle: Concepts, Methods, and Applications

  • Editors: Ronald P. Rij

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-61779-037-9

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media, LLC 2011

  • Hardcover ISBN: 978-1-61779-036-2Published: 08 March 2011

  • Softcover ISBN: 978-1-4939-5825-2Published: 23 August 2016

  • eBook ISBN: 978-1-61779-037-9Published: 23 March 2011

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XI, 425

  • Number of Illustrations: 21 b/w illustrations, 18 illustrations in colour

  • Topics: Human Genetics, Virology

Buy it now

Buying options

eBook USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access