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Methods in Molecular Biology

Gene Prediction

Methods and Protocols

Editors: Kollmar, Martin (Ed.)

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  • Includes cutting-edge methods and protocols
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts
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eBook $149.00
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  • ISBN 978-1-4939-9173-0
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Hardcover $199.99
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About this book

This volume introduces software used for gene prediction with focus on eukaryotic genomes. The chapters in this book describe software and web server usage as applied in common use-cases, and explain ways to simplify re-annotation of long available genome assemblies. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary computational requirements, step-by-step, readily reproducible computational protocols, and tips on troubleshooting and avoiding known pitfalls.

Cutting-edge and thorough, Gene Prediction: Methods and Protocols is a valuable resource for researchers and research groups working on the assembly and annotation of single species or small groups of species. 
Chapter 3 is available open access under a CC BY 4.0 license via link.springer.com.

Table of contents (17 chapters)

Table of contents (17 chapters)
  • tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences

    Pages 1-14

    Chan, Patricia P. (et al.)

  • Predicting RNA Families in Nucleotide Sequences Using StructRNAfinder

    Pages 15-27

    Maracaja-Coutinho, Vinicius (et al.)

  • Structural and Functional Annotation of Eukaryotic Genomes with GenSAS

    Pages 29-51

    Humann, Jodi L. (et al.)

  • Practical Guide for Fungal Gene Prediction from Genome Assembly and RNA-Seq Reads by FunGAP

    Pages 53-64

    Min, Byoungnam (et al.)

  • Whole-Genome Annotation with BRAKER

    Pages 65-95

    Hoff, Katharina J. (et al.)

Buy this book

eBook $149.00
price for USA in USD (gross)
  • ISBN 978-1-4939-9173-0
  • Digitally watermarked, DRM-free
  • Included format: PDF, EPUB
  • ebooks can be used on all reading devices
  • Immediate eBook download after purchase
Hardcover $199.99
price for USA in USD
  • ISBN 978-1-4939-9172-3
  • Free shipping for individuals worldwide
  • Usually dispatched within 3 to 5 business days.
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Bibliographic Information

Bibliographic Information
Book Title
Gene Prediction
Book Subtitle
Methods and Protocols
Editors
  • Martin Kollmar
Series Title
Methods in Molecular Biology
Series Volume
1962
Copyright
2019
Publisher
Humana Press
Copyright Holder
Springer Science+Business Media, LLC, part of Springer Nature
eBook ISBN
978-1-4939-9173-0
DOI
10.1007/978-1-4939-9173-0
Hardcover ISBN
978-1-4939-9172-3
Series ISSN
1064-3745
Edition Number
1
Number of Pages
XI, 284
Number of Illustrations
11 b/w illustrations, 44 illustrations in colour
Topics