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Methods in Molecular Biology

Modeling Peptide-Protein Interactions

Methods and Protocols

Editors: Schueler-Furman, Ora, London, Nir (Eds.)

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  • Includes cutting-edge methods and protocols
  • Provides step-by-step detail essential for reproducible results
  • Contains keynotes and implementation advice from the experts
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About this book

This volume covers an array of techniques available for studying peptide-protein docking and design. The book is divided into four sections: peptide binding site prediction; peptide-protein docking; prediction and design of peptide binding specificity; and the design of inhibitory peptides. The chapters in Modeling Peptide-Protein Interactions: Methods and Protocols cover topics such as the usage of ACCLUSTER and PeptiMap for peptide binding site prediction; AnchorDock and ATTRACT for blind, flexible docking of peptides to proteins; flexible peptide docking using HADDOCK and FlexPepDock; identifying loop-mediated protein-protein interactions using LoopFinder; and protein-peptide interaction design using PinaColada. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary details for successful application of the different approaches and step-by-step, readily reproducible protocols, as well as tips on troubleshooting and avoiding known pitfalls.

Cutting-edge and thorough, Modeling Peptide-Protein Interactions: Methods and Protocols provides a diverse and unified overview of this rapidly advancing field of major interest and applicability.

 

Table of contents (17 chapters)

Table of contents (17 chapters)
  • The Usage of ACCLUSTER for Peptide Binding Site Prediction

    Pages 3-9

    Yan, Chengfei (et al.)

  • Detection of Peptide-Binding Sites on Protein Surfaces Using the Peptimap Server

    Pages 11-20

    Bohnuud, Tanggis (et al.)

  • Peptide Suboptimal Conformation Sampling for the Prediction of Protein-Peptide Interactions

    Pages 21-34

    Lamiable, Alexis (et al.)

  • Template-Based Prediction of Protein-Peptide Interactions by Using GalaxyPepDock

    Pages 37-47

    Lee, Hasup (et al.)

  • Application of the ATTRACT Coarse-Grained Docking and Atomistic Refinement for Predicting Peptide-Protein Interactions

    Pages 49-68

    Schindler, Christina (et al.)

Buy this book

eBook $89.00
price for USA in USD
  • ISBN 978-1-4939-6798-8
  • Digitally watermarked, DRM-free
  • Included format: EPUB, PDF
  • ebooks can be used on all reading devices
  • Immediate eBook download after purchase
Hardcover $119.99
price for USA in USD
  • ISBN 978-1-4939-6796-4
  • with online files
  • Free shipping for individuals worldwide. COVID-19 shipping restrictions apply.
  • Immediate ebook access, if available*, with your print order
  • Usually ready to be dispatched within 3 to 5 business days.
Softcover $119.00
price for USA in USD
  • ISBN 978-1-4939-8302-5
  • Free shipping for individuals worldwide. COVID-19 shipping restrictions apply.
  • Immediate ebook access, if available*, with your print order
  • Usually ready to be dispatched within 3 to 5 business days.
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Bibliographic Information

Bibliographic Information
Book Title
Modeling Peptide-Protein Interactions
Book Subtitle
Methods and Protocols
Editors
  • Ora Schueler-Furman
  • Nir London
Series Title
Methods in Molecular Biology
Series Volume
1561
Copyright
2017
Publisher
Humana Press
Copyright Holder
Springer Science+Business Media LLC
eBook ISBN
978-1-4939-6798-8
DOI
10.1007/978-1-4939-6798-8
Hardcover ISBN
978-1-4939-6796-4
Softcover ISBN
978-1-4939-8302-5
Series ISSN
1064-3745
Edition Number
1
Number of Pages
XI, 311
Number of Illustrations
19 b/w illustrations, 68 illustrations in colour
Topics

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