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  • Book
  • © 2015

Chromatin Protocols

  • Includes new and revised cutting-edge methods and protocols for the study of chromatin
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts
  • Includes supplementary material: sn.pub/extras

Part of the book series: Methods in Molecular Biology (MIMB, volume 1288)

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Table of contents (27 protocols)

  1. Front Matter

    Pages i-xiv
  2. Preparation and Analysis of Positioned Mononucleosomes

    • Olga I. Kulaeva, Vasily M. Studitsky
    Pages 15-26
  3. Chromatin Imaging with Time-Lapse Atomic Force Microscopy

    • Yuri L. Lyubchenko, Luda S. Shlyakhtenko
    Pages 27-42
  4. Histone Deacetylase Activity Assay

    • Lirong Peng, Zhigang Yuan, Edward Seto
    Pages 95-108
  5. In Vitro Histone Demethylase Assays

    • Kenji Kokura, Lidong Sun, Jia Fang
    Pages 109-122
  6. Integrated DNA Methylation and Chromatin Structural Analysis at Single-Molecule Resolution

    • Carolina E. Pardo, Nancy H. Nabilsi, Russell P. Darst, Michael P. Kladde
    Pages 123-141
  7. In Vitro and In Vivo Assays for Studying Histone Ubiquitination and Deubiquitination

    • Heui-Yun Joo, Qian Dai, Amanda E. Jones, Ling Zhai, Hengbin Wang
    Pages 213-230
  8. Identification and Characterization of Nonhistone Chromatin Proteins: Human Positive Coactivator 4 as a Candidate

    • Sujata Kumari, Chandrima Das, Sweta Sikder, Manoj Kumar, Mahesh Bachu, Udaykumar Ranga et al.
    Pages 245-272
  9. Methods to Study Transcription-Coupled Repair in Chromatin

    • Hélène Gaillard, Ralf Erik Wellinger, Andrés Aguilera
    Pages 273-288
  10. Detecting ATM-Dependent Chromatin Modification in DNA Damage Response

    • Durga Udayakumar, Nobuo Horikoshi, Lopa Mishra, Clayton Hunt, Tej K. Pandita
    Pages 317-336
  11. Imaging Local Deposition of Newly Synthesized Histones in UVC-Damaged Chromatin

    • Salomé Adam, Juliette Dabin, Siau-Kun Bai, Sophie E. Polo
    Pages 337-347

About this book

Updated and revised, this thorough volume is organized such that it begins with techniques related to the study of chromatin structure. Protocols for reconstitution of chromatin on solid supports for analysis, preparation of positioned mononucleosomes, techniques to study premature chromatin condensation and the use of comparative genomic hybridization to assess genomic aberration are included as well. Novel techniques for imaging chromatin using atomic force microscopy and the isolation of specific genomic regions using engineered DNA binding molecules generated by CRISPR are then examined. That section is followed by protocols to analyze DNA and histone modifications, while the third section includes methods to study DNA replication and repair, in the context of chromatin. Last but not least, protocols for studying chromatin and its relation with transcriptional regulation are presented in a fourth section. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols and tips on troubleshooting and avoiding known pitfalls.

Authoritative and up-to-date, Chromatin Protocols, Third Edition aims to help researchers in facilitating in-depth molecular analysis of various aspects of chromatin structure and function.

Editors and Affiliations

  • H. Lee Moffitt Cancer Center & Research Institute, Tampa, USA

    Srikumar P. Chellappan

Bibliographic Information

  • Book Title: Chromatin Protocols

  • Editors: Srikumar P. Chellappan

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-4939-2474-5

  • Publisher: Humana New York, NY

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media New York 2015

  • Hardcover ISBN: 978-1-4939-2473-8Published: 01 April 2015

  • Softcover ISBN: 978-1-4939-4406-4Published: 05 October 2016

  • eBook ISBN: 978-1-4939-2474-5Published: 31 March 2015

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 3

  • Number of Pages: XIV, 492

  • Number of Illustrations: 38 b/w illustrations, 36 illustrations in colour

  • Topics: Cell Biology

Buy it now

Buying options

eBook USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access