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miRNomics

MicroRNA Biology and Computational Analysis

  • Includes cutting-edge methods and protocols
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts

Part of the book series: Methods in Molecular Biology (MIMB, volume 2257)

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Table of contents (19 protocols)

  1. Front Matter

    Pages i-xiii
  2. Regulation of MicroRNAs

    • Kemal Ergin, Rahmi Çetinkaya
    Pages 1-32
  3. Experimental MicroRNA Detection Methods

    • Bilge Yaylak, Bünyamin Akgül
    Pages 33-55
  4. Functional Annotation of MicroRNAs Using Existing Resources

    • Harsh Dweep, Louise C. Showe, Andrew V. Kossenkov
    Pages 57-77
  5. Experimental MicroRNA Targeting Validation

    • Bala Gür Dedeoğlu, Senem Noyan
    Pages 79-90
  6. Endogenous miRNA Sponges

    • Ayşe Hale Alkan, Bünyamin Akgül
    Pages 91-104
  7. MicroRNA Targeting

    • Hossein Ghanbarian, Mehmet Taha Yıldız, Yusuf Tutar
    Pages 105-130
  8. MicroRNA Databases and Tools

    • Tharcísio Soares de Amorim, Daniel Longhi Fernandes Pedro, Alexandre Rossi Paschoal
    Pages 131-166
  9. Computational Detection of Pre-microRNAs

    • Müşerref Duygu Saçar Demirci
    Pages 167-174
  10. Computational Methods for Predicting Mature microRNAs

    • Malik Yousef, Alisha Parveen, Abhishek Kumar
    Pages 175-185
  11. Computational Detection of MicroRNA Targets

    • Pedro Gabriel Nachtigall, Luiz Augusto Bovolenta
    Pages 187-209
  12. Evolution and Phylogeny of MicroRNAs — Protocols, Pitfalls, and Problems

    • Cristian A. Velandia-Huerto, Ali M. Yazbeck, Jana Schor, Peter F. Stadler
    Pages 211-233
  13. Ensemble Classifiers for Multiclass MicroRNA Classification

    • Luise Odenthal, Jens Allmer, Malik Yousef
    Pages 235-254
  14. MicroRNAs in Genetic Etiology of Human Diseases

    • Melis Olcum, Kemal Ugur Tufekci, Sermin Genc
    Pages 255-268
  15. Role of Exosomal MicroRNAs in Cell-to-Cell Communication

    • Bora Tastan, Emre Tarakcioglu, Yelda Birinci, Yongsoo Park, Sermin Genc
    Pages 269-292
  16. MicroRNAs and Heat Shock Proteins in Breast Cancer Biology

    • Mehmet Taha Yildiz, Lütfi Tutar, Nazlı Irmak Giritlioğlu, Banu Bayram, Yusuf Tutar
    Pages 293-310
  17. Role of MicroRNAs in Extreme Animal Survival Strategies

    • Hanane Hadj-Moussa, Liam J. Hawkins, Kenneth B. Storey
    Pages 311-347
  18. Computational and Bioinformatics Methods for MicroRNA Gene Prediction

    • Ege Riza Karagur, Sakir Akgun, Hakan Akca
    Pages 349-373
  19. The Role of MiRNA in Cancer: Pathogenesis, Diagnosis, and Treatment

    • Erez Uzuner, Gizem Tugçe Ulu, Sevim Beyza Gürler, Yusuf Baran
    Pages 375-422
  20. 44 Current Challenges in miRNomics

    • Bünyamin Akgül, Peter F. Stadler, Liam J. Hawkins, Hanane Hadj-Moussa, Kenneth B. Storey, Kemal Ergin et al.
    Pages 423-438

About this book

This second edition presents an up-to-date overview of the current state-of-the-art protocols and aims to miRNomics into a broader perspective. Chapters detail methods and techniques ranging from miRNA biogenesis, their biological function, computational analyses to their medical implications and applications.  Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, application details for both the expert and non-expert reader and tips on troubleshooting and avoiding known pitfalls.

 

Authoritative and accessible, miRNomics: MicroRNA Biology and Computational Analysis, Second Edition ensures successful results in the further study of this vital field.


Editors and Affiliations

  • Medical Informatics and Bioinformatics, Institute for Measurement Engineering and Sensor Technology, Hochschule Ruhr West, University of Applied Sciences, Mülheim adR, Germany

    Jens Allmer

  • Department of Information System, Galilee Digital Health Research Center (GDH), Zefat Academic College, Zefat, Israel

    Malik Yousef

Bibliographic Information

  • Book Title: miRNomics

  • Book Subtitle: MicroRNA Biology and Computational Analysis

  • Editors: Jens Allmer, Malik Yousef

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-0716-1170-8

  • Publisher: Humana New York, NY

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media, LLC, part of Springer Nature 2022

  • Hardcover ISBN: 978-1-0716-1169-2Published: 26 August 2021

  • Softcover ISBN: 978-1-0716-1172-2Published: 26 August 2021

  • eBook ISBN: 978-1-0716-1170-8Published: 25 August 2021

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 2

  • Number of Pages: XIII, 442

  • Number of Illustrations: 5 b/w illustrations, 65 illustrations in colour

  • Topics: Bioinformatics, Genetics and Genomics

Buy it now

Buying options

eBook USD 169.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 299.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access