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Immunoinformatics

  • Book
  • © 2020

Overview

Editors:
  1. Namrata Tomar

    1. Department of BioMedical Engineering, Medical College of Wisconsin, Milwaukee, USA

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  • Includes cutting-edge techniques
  • Provides step-by-step detail essential for reproducible results
  • Contains key implementation advice from the experts

Part of the book series: Methods in Molecular Biology (MIMB, volume 2131)

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Table of contents (23 protocols)

  1. Front Matter

    Pages i-xiii
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  2. Reverse Vaccinology and Its Applications

    • Amol M. Kanampalliwar
    Pages 1-16

  3. Computational Methodology for Peptide Vaccine Design for Zika Virus: A Bioinformatics Approach

    • Ashesh Nandy, Smarajit Manna, Subhash C. Basak
    Pages 17-30

  4. High-Definition Genomic Analysis of HLA Genes Via Comprehensive HLA Allele Genotyping

    • Shuji Kawaguchi, Fumihiko Matsuda
    Pages 31-38

  5. A Computational Vaccine Designing Approach for MERS-CoV Infections

    • Hiba Siddig Ibrahim, Shamsoun Khamis Kafi
    Pages 39-145

  6. An Alignment-Independent Platform for Allergenicity Prediction

    • Ivan Dimitrov, Irini Doytchinova
    Pages 147-153

  7. Immunoinformatics and Epitope Prediction

    • Jayashree Ramana, Kusum Mehla
    Pages 155-171

  8. Vaccine Design Against Leptospirosis Using an Immunoinformatic Approach

    • Kumari Snehkant Lata, Vibhisha Vaghasia, Shivarudrappa Bhairappanvar, Saumya Patel, Jayashankar Das
    Pages 173-184

  9. Characterizing MHC-I Genotype Predictive Power for Oncogenic Mutation Probability in Cancer Patients

    • Lainie Beauchemin, Michael Slifker, David Rossell, Joan Font-Burgada
    Pages 185-198

  10. Network Analysis of Large-Scale Data and Its Application to Immunology

    • Lauren Benoodt, Juilee Thakar
    Pages 199-211

  11. In Silico-Guided Sequence Modification of Epitopes in Cancer Vaccine Development

    • Winfrey Pui Yee Hoo, Pui Yan Siak, Lionel L. A. In
    Pages 213-228

  12. An Immunoinformatics Approach in Design of Synthetic Peptide Vaccine Against Influenza Virus

    • Neha Lohia, Manoj Baranwal
    Pages 229-243

  13. A New Approach to Assess mAb Aggregation

    • Illarion V. Turko
    Pages 245-254

  14. Generation of Variability-Free Reference Proteomes from Pathogenic Organisms for Epitope-Vaccine Design

    • Jose L. Sanchez-Trincado, Pedro A. Reche
    Pages 255-263

  15. Immunoinformatic Identification of Potential Epitopes

    • Priti Desai, Divya Tarwadi, Bhargav Pandya, Bhrugu Yagnik
    Pages 265-275

  16. Immunoinformatic Approaches for Vaccine Designing Against Viral Infections

    • Richa Anand, Richa Raghuwanshi
    Pages 277-288

  17. EPCES and EPSVR: Prediction of B-Cell Antigenic Epitopes on Protein Surfaces with Conformational Information

    • Shide Liang, Dandan Zheng, Bo Yao, Chi Zhang
    Pages 289-297

  18. SVMTriP: A Method to Predict B-Cell Linear Antigenic Epitopes

    • Bo Yao, Dandan Zheng, Shide Liang, Chi Zhang
    Pages 299-307

  19. Modeling Phage–Bacteria Dynamics

    • Saptarshi Sinha, Rajdeep Kaur Grewal, Soumen Roy
    Pages 309-327

  20. Dynamics of Mycobacteriophage—Mycobacterial Host Interaction

    • Arabinda Ghosh, Tridip Phukan, Surabhi Johari, Ashwani Sharma, Abha Vashista, Subrata Sinha
    Pages 329-347
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Keywords

About this book

This book covers a wide range of diverse immunoinformatics research topics, involving tools and databases of potential epitope prediction, HLA gene analysis, MHC characterizing, in silico vaccine design, mathematical modeling of host-pathogen interactions, and network analysis of immune system data. In that way, this fully updated volume explores the enormous value of computational tools and models in immunology research. Written for the highly successful Methods in Molecular Biology series, chapters include the kind of key insights and detailed implementation advice to encourage successful results in the lab. 

Authoritative and practical, Immunoinformatics, Third Edition serves as an ideal guide for scientists working at the intersection of bioinformatics, mathematical modelling, and statistics for the study of immune systems biology.

Editors and Affiliations

  • Department of BioMedical Engineering, Medical College of Wisconsin, Milwaukee, USA

    Namrata Tomar

Bibliographic Information

  • Book Title: Immunoinformatics

  • Editors: Namrata Tomar

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-0716-0389-5

  • Publisher: Humana New York, NY

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media, LLC, part of Springer Nature 2020

  • Hardcover ISBN: 978-1-0716-0388-8Published: 12 March 2020

  • Softcover ISBN: 978-1-0716-0391-8Published: 12 March 2021

  • eBook ISBN: 978-1-0716-0389-5Published: 11 March 2020

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 3

  • Number of Pages: XIII, 409

  • Number of Illustrations: 14 b/w illustrations, 118 illustrations in colour

  • Topics: Immunology, Bioinformatics

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