Skip to main content
  • Book
  • © 2019

Yeast Systems Biology

Methods and Protocols

  • Includes cutting-edge methods and protocols
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts

Part of the book series: Methods in Molecular Biology (MIMB, volume 2049)

Buy it now

Buying options

eBook USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 249.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access

This is a preview of subscription content, log in via an institution to check for access.

Table of contents (24 protocols)

  1. Front Matter

    Pages i-xviii
  2. Yeast Systems Biology

    1. Front Matter

      Pages 1-1
  3. Experimental Systems Biology: High-Throughput Genome-Wide and Molecular Studies

    1. Front Matter

      Pages 15-15
    2. Capture of Ribonucleotides in Yeast Genomic DNA Using Ribose-Seq

      • Sathya Balachander, Taehwan Yang, Gary Newnam, Waleed M. M. El-Sayed, Kyung Duk Koh, Francesca Storici
      Pages 17-37
    3. Method for Multiplexed Integration of Synergistic Alleles and Metabolic Pathways in Yeasts via CRISPR-Cas9

      • Jessica M. Walter, Max G. Schubert, Stephanie H. Kung, Kristy Hawkins, Darren M. Platt, Aaron D. Hernday et al.
      Pages 39-72
    4. Ultrahigh-Density Screens for Genome-Wide Yeast EMAPs in a Single Plate

      • Katherine Licon, John Paul Shen, Brenton P. Munson, Manuel Michaca, Cole Fassino, Luke Fassino et al.
      Pages 73-85
    5. Epi-ID: Systematic and Direct Screening for Chromatin Regulators in Yeast by Barcode-ChIP-Seq

      • Deepani W. Poramba-Liyanage, Tessy Korthout, Fred van Leeuwen
      Pages 87-103
    6. Mapping the Saccharomyces cerevisiae Spatial Proteome with High Resolution Using hyperLOPIT

      • Daniel J. H. Nightingale, Stephen G. Oliver, Kathryn S. Lilley
      Pages 165-190
    7. Data-Independent Acquisition for Yeast Glycoproteomics

      • Lucía F. Zacchi, Benjamin L. Schulz
      Pages 191-202
    8. Protein–Protein Interaction Profiling in Candida albicans Revealed by Biochemical Purification–Mass Spectrometry (BP/MS)

      • Reza Pourhaghighi, Teresa R. O’Meara, Leah E. Cowen, Andrew Emili
      Pages 203-211
    9. Probing the RNA-Binding Proteome from Yeast to Man: Major Advances and Challenges

      • Benedikt M. Beckmann, Sander Granneman
      Pages 213-231
    10. Metabolomic Analysis of Yeast and Human Cells: Latest Advances and Challenges

      • Romanas Chaleckis, Kazuto Ohashi, Isabel Meister, Shama Naz, Craig E. Wheelock
      Pages 233-245
    11. Measuring the Activity of Plasma Membrane and Vacuolar Transporters in Yeast

      • Melody Cools, Maria Rompf, Andreas Mayer, Bruno André
      Pages 247-261
  4. Computational Systems Biology: Data Management and Modeling the Cell

    1. Front Matter

      Pages 283-283

About this book

This second edition volume expands on the previous edition with a look at the latest advances in techniques to study yeast and its core set of interactions, modules, architectures, and network dynamics that are common in all eukaryotes. The chapters in this book are organized into Four Parts: Part One provides readers with an update on the development of novel experimental and computational approaches to yeast systems biology; Part Two explores high-throughput methods used to study yeast epigenome, transcriptome, proteome, and metabolome; Part Three talks about computational systems biology, and focuses on data management, dynamic modeling, constraint-based models of metabolic networks, and multi-level ‘omics data; while Part Four looks at experimental platforms that utilize yeast to model systemic human diseases such as Alzheimer’s and Parkinson’s diseases. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics; lists of the necessary materials and reagents; step-by-step, readily reproducible laboratory protocols; and tips on troubleshooting and avoiding known pitfalls.

Cutting-edge and comprehensive, Yeast System Biology: Methods and Protocols, Second Edition is a valuable tool for graduate students, post-doctoral researchers, and experts who are interested in learning about the latest developments in the study of yeast.



Editors and Affiliations

  • Department of Biochemistry and Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK

    Stephen G. Oliver

  • Genetadi Biotech, Parque Tecnológico de Bizkaia, Biscay, Spain

    Juan I. Castrillo

Bibliographic Information

  • Book Title: Yeast Systems Biology

  • Book Subtitle: Methods and Protocols

  • Editors: Stephen G. Oliver, Juan I. Castrillo

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-4939-9736-7

  • Publisher: Humana New York, NY

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media, LLC, part of Springer Nature 2019

  • Hardcover ISBN: 978-1-4939-9735-0Published: 11 October 2019

  • Softcover ISBN: 978-1-4939-9738-1Published: 12 October 2020

  • eBook ISBN: 978-1-4939-9736-7Published: 10 October 2019

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 2

  • Number of Pages: XVIII, 447

  • Number of Illustrations: 25 b/w illustrations, 48 illustrations in colour

  • Topics: Systems Biology, Microbiology

Buy it now

Buying options

eBook USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 249.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access