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Transcriptomics in Health and Disease

  • Describes how to study the “functional” and the “non-functional” transcriptome
  • Provides timely updates on advances in the field of transcriptomics in the six years since the first edition
  • Addresses the role of transcriptomics in challenging groups of diseases and complex genetic diseases

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Table of contents (18 chapters)

  1. Front Matter

    Pages i-xi
  2. Basic Principles of the Transcriptome and Its Analysis

    1. Front Matter

      Pages 1-1
    2. What Is the Transcriptome and How It Is Evaluated

      • Amanda F. Assis, Ernna H. Oliveira, Paula B. Donate, Silvana Giuliatti, Catherine Nguyen, Geraldo A. Passos
      Pages 3-50
    3. Alternative Splicing of Pre-messenger RNA

      • Vanessa Cristina Arfelli, Leticia Fröhlich Archangelo
      Pages 51-71
    4. Transcriptome Analysis Using RNA-seq and scRNA-seq

      • Waldeyr Mendes Cordeiro Silva, Fabián Andrés Hurtado, Kelly Simi, Pedro Henrique Aragão Barros, Dimitri Sokolowskei, Ildinete Silva-Pereira et al.
      Pages 73-107
    5. Transcriptomics of Neonatal and Infant Human Thymus

      • Carlos Alberto Moreira-Filho, Silvia Yumi Bando, Fernanda Bernardi Bertonha, Magda Carneiro-Sampaio
      Pages 109-125
    6. Methods for Gene Co-expression Network Visualization and Analysis

      • Carlos Alberto Moreira-Filho, Silvia Yumi Bando, Fernanda Bernardi Bertonha, Filipi Nascimento Silva, Luciano da Fontoura Costa
      Pages 143-163
    7. The Interplay Between the Transcriptomics and Proteomics Profiles

      • John Oluwafemi Teibo, Virgínia Campos Silvestrini, Alessandra P. Vargas, Guilherme Pauperio Lanfredi, Vítor Marcel Faça
      Pages 187-208
    8. Transcriptome During Normal Cell Differentiation

      • Karina Fittipaldi Bombonato-Prado, Adalberto Luiz Rosa, Paulo Tambasco de Oliveira, Janaína Andrea Dernowsek, Vanessa Fontana, Adriane Feijó Evangelista et al.
      Pages 209-222
    9. Transcriptomics to Dissect the Immune System

      • Hideyuki Yoshida, Mitsuru Matsumoto, Minoru Matsumoto
      Pages 223-245
  3. Transcriptome in Disease

    1. Front Matter

      Pages 247-247
    2. Transcriptome Profiling in Autoimmune Diseases

      • Cristhianna V. A. Collares, Eduardo A. Donadi
      Pages 249-275
    3. Transcriptome Profiling in Experimental Inflammatory Arthritis

      • Olga Martinez Ibañez, José Ricardo Jensen, Marcelo De Franco
      Pages 277-298
    4. Trannscriptomics and Immune Response in Human Cancer

      • L. P. Chaves, C. M. Melo, W. Lautert-Dutra, A. L. Caliari, J. A. Squire
      Pages 299-315
    5. MicroRNAs in Cancer

      • Adriane F. Evangelista, Ana Julia A. de Freitas, Muriele B. Varuzza, Rhafaela L. Causin, Tatiana T. Komoto, Marcia M. C. Marques
      Pages 317-340
    6. Oxidative Stress, DNA Damage, and Transcriptional Expression of DNA Repair and Stress Response Genes in Diabetes Mellitus

      • Jéssica Ellen B. F. Lima, Natália C. S. Moreira, Paula Takahashi, Danilo J. Xavier, Elza T. Sakamoto-Hojo
      Pages 341-365
    7. Large-Scale Gene Expression in Monogenic and Complex Genetic Diseases

      • Anette S. B. Wolff, Adam Handel, Bergithe E. Oftedal
      Pages 367-394
    8. Transcriptome in Human Mycoses

      • Nalu T. A. Peres, Tamires A. Bitencourt, Gabriela F. Persinoti, Elza A. S. Lang, Antonio Rossi, Nilce M. Martinez-Rossi
      Pages 395-435

About this book

The study of transcriptomics is key to understanding complex diseases. This new edition will build on the foundation of the first edition while incorporating the progress that has been made in the field of transcriptomics in the past six years, including bioinformatics for data analysis. Written by leading experts, chapters address new subjects such as methodological advances in large-scale sequencing, the sequencing of single-cells, and spatial transcriptomics. The new edition will address how transcriptomics may be used in combination with genetic strategies to identify causative genes in monogenic and complex genetic diseases. Coverage will also explore transcriptomics in challenging groups of diseases, such as cancer, inflammation, bacterial infection, and autoimmune diseases. The updated volume will be useful for geneticists, genome biologists, biomedical researchers, molecular biologists, bioinformaticians, and students, among others.

Editors and Affiliations

  • Molecular Immunogenetics Group, Department of Genetics, School of Medicine of Ribeirão Preto, University of São Paulo, Ribeirão Preto, Brazil

    Geraldo A. Passos

About the editor

Geraldo Aleixo Passos received his PhD degree in biochemistry (1988) from Ribeirão Preto Medical School, University of São Paulo, USP, Brazil. His postdoctoral studies were conducted at the Molecular Genetics Institute of Montpellier (CNRS), France (1992-94) with sequencing and physical mapping of the human immunoglobulin lambda locus on chromosome 22q11.2. For several years, he worked in close collaboration with the microarray laboratory at Centre d´Immunologie de Marseille-Luminy (CIML, Marseille, France) (1999-2001) and then the Unité INSERM 1090 in Marseille (2002-17) to study the large-scale gene expression in the thymus.  He is currently Associate Professor (Genetics and Molecular Biology) at School of Dentistry and Ribeirão Preto Medical School (USP, Campus of Ribeirão Preto, Brazil) in which he is the coordinator of the Molecular Immunogenetics Group.

Bibliographic Information

  • Book Title: Transcriptomics in Health and Disease

  • Editors: Geraldo A. Passos

  • DOI: https://doi.org/10.1007/978-3-030-87821-4

  • Publisher: Springer Cham

  • eBook Packages: Biomedical and Life Sciences, Biomedical and Life Sciences (R0)

  • Copyright Information: The Editor(s) (if applicable) and The Author(s), under exclusive license to Springer Nature Switzerland AG 2022

  • Hardcover ISBN: 978-3-030-87820-7Published: 08 March 2022

  • eBook ISBN: 978-3-030-87821-4Published: 07 March 2022

  • Edition Number: 2

  • Number of Pages: XI, 474

  • Number of Illustrations: 5 b/w illustrations, 62 illustrations in colour

  • Topics: Genetics and Genomics, Biochemistry, general, Bioinformatics

Buy it now

Buying options

eBook USD 169.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access