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  • © 2012

Algorithms in Bioinformatics

12th International Workshop, WABI 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 7534)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Conference series link(s): WABI: International Workshop on Algorithms in Bioinformatics

Conference proceedings info: WABI 2012.

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Table of contents (35 papers)

  1. Front Matter

  2. Preserving Inversion Phylogeny Reconstruction

    • Matthias Bernt, Kun-Mao Chao, Jyun-Wei Kao, Martin Middendorf, Eric Tannier
    Pages 1-13
  3. Efficient Computation of Popular Phylogenetic Tree Measures

    • Constantinos Tsirogiannis, Brody Sandel, Dimitris Cheliotis
    Pages 30-43
  4. SibJoin: A Fast Heuristic for Half-Sibling Reconstruction

    • Daniel G. Brown, Daniel Dexter
    Pages 44-56
  5. Estimating Population Size via Line Graph Reconstruction

    • Bjarni V. Halldórsson, Dima Blokh, Roded Sharan
    Pages 69-80
  6. Extracting Conflict-Free Information from Multi-labeled Trees

    • Akshay Deepak, David Fernández-Baca, Michelle M. McMahon
    Pages 81-92
  7. An Optimal Reconciliation Algorithm for Gene Trees with Polytomies

    • Manuel Lafond, Krister M. Swenson, Nadia El-Mabrouk
    Pages 106-122
  8. Accounting for Gene Tree Uncertainties Improves Gene Trees and Reconciliation Inference

    • Thi Hau Nguyen, Jean-Philippe Doyon, Stéphanie Pointet, Anne-Muriel Arigon Chifolleau, Vincent Ranwez, Vincent Berry
    Pages 123-134
  9. RNA Tree Comparisons via Unrooted Unordered Alignments

    • Nimrod Milo, Shay Zakov, Erez Katzenelson, Eitan Bachmat, Yefim Dinitz, Michal Ziv-Ukelson
    Pages 135-148
  10. δ-TRIMAX: Extracting Triclusters and Analysing Coregulation in Time Series Gene Expression Data

    • Anirban Bhar, Martin Haubrock, Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay, Edgar Wingender
    Pages 165-177
  11. CLIIQ: Accurate Comparative Detection and Quantification of Expressed Isoforms in a Population

    • Yen-Yi Lin, Phuong Dao, Faraz Hach, Marzieh Bakhshi, Fan Mo, Anna Lapuk et al.
    Pages 178-189
  12. Improved Lower Bounds on the Compatibility of Quartets, Triplets, and Multi-state Characters

    • Brad Shutters, Sudheer Vakati, David Fernández-Baca
    Pages 190-200
  13. Comparing DNA Sequence Collections by Direct Comparison of Compressed Text Indexes

    • Anthony J. Cox, Tobias Jakobi, Giovanna Rosone, Ole B. Schulz-Trieglaff
    Pages 214-224
  14. Succinct de Bruijn Graphs

    • Alexander Bowe, Taku Onodera, Kunihiko Sadakane, Tetsuo Shibuya
    Pages 225-235

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  1. Algorithms in Bioinformatics

About this book

This book constitutes the refereed proceedings of the 12th International Workshop on Algorithms in Bioinformatics, WABI 2012, held in Ljubljana, Slovenia, in September 2012. WABI 2012 is one of six workshops which, along with the European Symposium on Algorithms (ESA), constitute the ALGO annual meeting and focuses on algorithmic advances in bioinformatics, computational biology, and systems biology with a particular emphasis on discrete algorithms and machine-learning methods that address important problems in molecular biology. The 35 full papers presented were carefully reviewed and selected from 92 submissions. The papers include algorithms for a variety of biological problems including phylogeny, DNA and RNA sequencing and analysis, protein structure, and others.

Editors and Affiliations

  • Department of Computer Science, Brown University, Providence, USA

    Ben Raphael

  • Department of Computer Science and Engineering, University of South Carolina, Columbia, USA

    Jijun Tang

Bibliographic Information

Buy it now

Buying options

Softcover Book USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access