Euro-Par 2011: Parallel Processing Workshops

1. Front Matter

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2. HiBB 2011: 2nd Workshop on High-Performance Bioinformatics and Biomedicine

   1. HiBB 2011: 2^nd Workshop on High Performance Bioinformatics and Biomedicine

      • Mario Cannataro

      Pages 1-2

   2. On Parallelizing On-Line Statistics for Stochastic Biological Simulations

      • Marco Aldinucci, Mario Coppo, Ferruccio Damiani, Maurizio Drocco, Eva Sciacca, Salvatore Spinella et al.

      Pages 3-12

   3. Scalable Sequence Similarity Search and Join in Main Memory on Multi-cores

      • Astrid Rheinländer, Ulf Leser

      Pages 13-22

   4. Enabling Data and Compute Intensive Workflows in Bioinformatics

      • Gaurang Mehta, Ewa Deelman, James A. Knowles, Ting Chen, Ying Wang, Jens Vöckler et al.

      Pages 23-32

   5. Homogenizing Access to Highly Time-Consuming Biomedical Applications through a Web-Based Interface

      • Luigi Grasso, Nuria Medina-Medina, Rosana Montes-Soldado, María M. Abad-Grau

      Pages 33-42

   6. Distributed Management and Analysis of Omics Data

      • Mario Cannataro, Pietro Hiram Guzzi

      Pages 43-52

3. Managing and Delivering Grid Services (MDGS)

   1. Managing and Delivering Grid Services (MDGS)

      • Thomas Schaaf, Adam S. Z. Belloum, Owen Appleton, Joan Serrat-Fernández, Tomasz Szepieniec

      Pages 53-53

   2. Resource Allocation for the French National Grid Initiative

      • Gilles Mathieu, Hélène Cordier

      Pages 55-63

   3. On Importance of Service Level Management in Grids

      • Tomasz Szepieniec, Joanna Kocot, Thomas Schaaf, Owen Appleton, Matti Heikkurinen, Adam S. Z. Belloum et al.

      Pages 64-75

   4. On-Line Monitoring of Service-Level Agreements in the Grid

      • Bartosz Balis, Renata Slota, Jacek Kitowski, Marian Bubak

      Pages 76-85

   5. Challenges of Future e-Infrastructure Governance

      • Dana Petcu

      Pages 86-95

   6. Influences between Performance Based Scheduling and Service Level Agreements

      • Antonella Galizia, Alfonso Quarati, Michael Schiffers, Mark Yampolskiy

      Pages 96-105

   7. User Centric Service Level Management in mOSAIC Applications

      • Massimiliano Rak, Rocco Aversa, Salvatore Venticinque, Beniamino Di Martino

      Pages 106-115

   8. Service Level Management for Executable Papers

      • Reginald Cushing, Spiros Koulouzis, Rudolf Strijkers, Adam S. Z. Belloum, Marian Bubak

      Pages 116-123

   9. Change Management in e-Infrastructures to Support Service Level Agreements

      • Silvia Knittl, Thomas Schaaf, Ilya Saverchenko

      Pages 124-133

4. PROPER 2011: Fourth Workshop on Productivity and Performance: Tools for HPC Application Development

   1. PROPER 2011: Fourth Workshop on Productivity and Performance Tools for HPC Application Development

      • Michael Gerndt

      Pages 135-135

   2. Scout: A Source-to-Source Transformator for SIMD-Optimizations

      • Olaf Krzikalla, Kim Feldhoff, Ralph Müller-Pfefferkorn, Wolfgang E. Nagel

      Pages 137-145

   3. Scalable Automatic Performance Analysis on IBM BlueGene/P Systems

      • Yury Oleynik, Michael Gerndt

      Pages 146-155

   4. An Approach to Creating Performance Visualizations in a Parallel Profile Analysis Tool

      • Wyatt Spear, Allen D. Malony, Chee Wai Lee, Scott Biersdorff, Sameer Shende

      Pages 156-165

This book constitutes thoroughly refereed post-conference proceedings of the workshops of the 17th International Conference on Parallel Computing, Euro-Par 2011, held in Bordeaux, France, in August 2011. The papers of these 12 workshops CCPI, CGWS, HeteroPar, HiBB, HPCVirt, HPPC, HPSS HPCF, PROPER, CCPI, and VHPC focus on promotion and advancement of all aspects of parallel and distributed computing.

• Web-based user interface
• cloud computing
• high performance computing
• model checking
• software design
• algorithm analysis and problem complexity

• Scilytics, Vienna, Austria

  Michael Alexander

• ICAR-CNR, Napoli, Italy

  Pasqua D’Ambra

• University of Amsterdam, Amsterdam, Netherlands

  Adam Belloum

• Innovative Computing Laboratory, The University of Tennessee, US

  George Bosilca

• Department of Experimental Medicine and Clinic, University Magna Græcia, Catanzaro, Italy

  Mario Cannataro

• Computer Science Department, University of Pisa, Italy

  Marco Danelutto

• Second University of Naples, Italy

  Beniamino Martino

• TUMünchen,, Garching, Germany

  Michael Gerndt

• Equipe Runtime, INRIA Bordeaux Sud-Ouest, Talence Cedex, France

  Emmanuel Jeannot, Raymond Namyst

• Equipe HIEPACS, INRIA Bordeaux Sud-Ouest, Talence Cedex, France

  Jean Roman

• Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, USA

  Stephen L. Scott, Geoffroy Vallée

• Department of Scientific Computing, University of Vienna, Vienna, Austria

  Jesper Larsson Traff

• Technische Universität München, Germany

  Josef Weidendorfer

Policies and ethics