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Algorithms for Computational Biology

4th International Conference, AlCoB 2017, Aveiro, Portugal, June 5-6, 2017, Proceedings

  • Conference proceedings
  • © 2017

Overview

Editors:
  1. Daniel Figueiredo

    1. University of Aveiro, Aveiro, Portugal

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  2. Carlos Martín-Vide

    1. Rovira i Virgili University, Tarragona, Spain

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  3. Diogo Pratas

    1. University of Aveiro, Aveiro, Portugal

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  4. Miguel A. Vega-Rodríguez

    1. University of Extremadura, Caceres, Spain

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 10252)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: AlCoB 2017.

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Table of contents (12 papers)

  1. Front Matter

    Pages I-X
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  2. Invited Talks

    1. Front Matter

      Pages 1-1
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    2. Biomedical Applications of Prototype Based Classifiers and Relevance Learning

      • Michael Biehl
      Pages 3-23

    3. Describing the Local Structure of Sequence Graphs

      • Yohei Rosen, Jordan Eizenga, Benedict Paten
      Pages 24-46

  3. Graph Algorithms for Computational Biology

    1. Front Matter

      Pages 47-47
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    2. Mapping RNA-seq Data to a Transcript Graph via Approximate Pattern Matching to a Hypertext

      • Stefano Beretta, Paola Bonizzoni, Luca Denti, Marco Previtali, Raffaella Rizzi
      Pages 49-61

    3. A Fast Algorithm for Large Common Connected Induced Subgraphs

      • Alessio Conte, Roberto Grossi, Andrea Marino, Lorenzo Tattini, Luca Versari
      Pages 62-74

    4. Ranking Vertices for Active Module Recovery Problem

      • Javlon E. Isomurodov, Alexander A. Loboda, Alexey A. Sergushichev
      Pages 75-84

    5. Computational Processes that Appear to Model Human Memory

      • John L. Pfaltz
      Pages 85-99

  4. Phylogenetics

    1. Front Matter

      Pages 101-101
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    2. Inferring the Distribution of Fitness Effects (DFE) of Newly-Arising Mutations Using Samples Taken from Evolving Populations in Real Time

      • Philip J. Gerrish, Nick Hengartner
      Pages 103-114

    3. An Efficient Algorithm for the Rooted Triplet Distance Between Galled Trees

      • Jesper Jansson, Ramesh Rajaby, Wing-Kin Sung
      Pages 115-126

    4. Clustering the Space of Maximum Parsimony Reconciliations in the Duplication-Transfer-Loss Model

      • Alex Ozdemir, Michael Sheely, Daniel Bork, Ricson Cheng, Reyna Hulett, Jean Sung et al.
      Pages 127-139

  5. Sequence Analysis and Other Biological Processes

    1. Front Matter

      Pages 141-141
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    2. CSA-X: Modularized Constrained Multiple Sequence Alignment

      • T. M. Rezwanul Islam, Ian McQuillan
      Pages 143-154

    3. Quantifying Information Flow in Chemical Reaction Networks

      • Ozan Kahramanoğulları
      Pages 155-166

    4. Parallel Biological Sequence Comparison in Linear Space with Multiple Adjustable Bands

      • Gabriel H. G. Silva, Edans F. O. Sandes, George Teodoro, Alba C. M. A. Melo
      Pages 167-179

  6. Back Matter

    Pages 181-181
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Other volumes

  1. Algorithms for Computational Biology

Keywords

About this book

This book constitutes the proceedings of the 4th InternationalConference on Algorithms for Computational Biology, AlCoB 2017, held in Aveiro, Portugal, in June 2017.
The 10 full papers presented together with 2 invited papers were carefully reviewed and selected from 24 submissions. They are organized in the following topical sections: Graph Algorithms for Computational Biology; Phylogenetics; and Sequence Analysis and Other Biological Processes.

Editors and Affiliations

  • University of Aveiro, Aveiro, Portugal

    Daniel Figueiredo, Diogo Pratas

  • Rovira i Virgili University, Tarragona, Spain

    Carlos Martín-Vide

  • University of Extremadura, Caceres, Spain

    Miguel A. Vega-Rodríguez

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