Research in Computational Molecular Biology

Learning Microbial Interaction Networks from Metagenomic Count Data

Pages 32-43

Biswas, Surojit (et al.)

Immunoglobulin Classification Using the Colored Antibody Graph

Pages 44-59

Bonissone, Stefano R. (et al.)

CIDANE: Comprehensive Isoform Discovery and Abundance Estimation

Pages 60-61

Canzar, Stefan (et al.)

Diffusion Component Analysis: Unraveling Functional Topology in Biological Networks

Pages 62-64

Cho, Hyunghoon (et al.)

Fragmentation Trees Reloaded

Pages 65-79

Dührkop, Kai (et al.)

KGSrna: Efficient 3D Kinematics-Based Sampling for Nucleic Acids

Pages 80-95

Fonseca, Rasmus (et al.)

Locating a Tree in a Phylogenetic Network in Quadratic Time

Pages 96-107

Gambette, Philippe (et al.)

Constructing Structure Ensembles of Intrinsically Disordered Proteins from Chemical Shift Data

Pages 108-121

Gong, Huichao (et al.)

Comets (Constrained Optimization of Multistate Energies by Tree Search): A Provable and Efficient Algorithm to Optimize Binding Affinity and Specificity with Respect to Sequence

Pages 122-135

Hallen, Mark A. (et al.)

Efficient and Accurate Multiple-Phenotypes Regression Method for High Dimensional Data Considering Population Structure

Pages 136-153

Joo, Jong Wha J. (et al.)

BWM*: A Novel, Provable, Ensemble-Based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design

Pages 154-166

Jou, Jonathan D. (et al.)

An Efficient Nonlinear Regression Approach for Genome-Wide Detection of Marginal and Interacting Genetic Variations

Pages 167-187

Lee, Seunghak (et al.)

Exploration of Designability of Proteins Using Graph Features of Contact Maps: Beyond Lattice Models

Pages 188-201

Leelananda, Sumudu P. (et al.)

CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer

Pages 202-204

Leiserson, Mark D. M. (et al.)

Deep Feature Selection: Theory and Application to Identify Enhancers and Promoters

Pages 205-217

Li, Yifeng (et al.)

Protein Contact Prediction by Integrating Joint Evolutionary Coupling Analysis and Supervised Learning

Pages 218-221

Ma, Jianzhu (et al.)

ScaffMatch: Scaffolding Algorithm Based on Maximum Weight Matching

Pages 222-223

Mandric, Igor (et al.)

A Symmetric Length-Aware Enrichment Test

Pages 224-242

Manescu, David (et al.)

Functional Alignment of Metabolic Networks

Pages 243-255

Mazza, Arnon (et al.)

Joint Inference of Genome Structure and Content in Heterogeneous Tumor Samples

Pages 256-258

McPherson, Andrew (et al.)

Ultra-Large Alignments Using Ensembles of Hidden Markov Models

Pages 259-260

Nguyen, Nam-phuong (et al.)

Topological Signatures for Population Admixture

Pages 261-275

Parida, Laxmi (et al.)

Haplotype Allele Frequency (HAF) Score: Predicting Carriers of Ongoing Selective Sweeps Without Knowledge of the Adaptive Allele

Pages 276-280

Ronen, Roy (et al.)

Gap Filling as Exact Path Length Problem

Pages 281-292

Salmela, Leena (et al.)

Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations

Pages 293-308

Sefer, Emre (et al.)

A Fast and Exact Algorithm for the Exemplar Breakpoint Distance

Pages 309-322

Shao, Mingfu (et al.)

Deciding When to Stop: Efficient Experimentation to Learn to Predict Drug-Target Interactions (Extended Abstract)

Pages 323-325

Temerinac-Ott, Maja (et al.)

On the Sample Complexity of Cancer Pathways Identification

Pages 326-337

Vandin, Fabio (et al.)

A Novel Probabilistic Methodology for eQTL Analysis of Signaling Networks

Pages 338-339

Wilentzik, Roni (et al.)

Rapidly Registering Identity-by-Descent Across Ancestral Recombination Graphs

Pages 340-353

Yang, Shuo (et al.)

Computational Protein Design Using AND/OR Branch-and-Bound Search

Pages 354-366

Zhou, Yichao (et al.)