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Practical Applications of Computational Biology & Bioinformatics, 14th International Conference (PACBB 2020)

  • Conference proceedings
  • © 2021

Overview

Editors:
  1. Gabriella Panuccio

    1. Enhanced Regenerative Medicine, Istituto Italiano di Tecnologia, Genoa, Italy

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  2. Miguel Rocha

    1. Department de Informática, Universidade do Minho, Braga, Portugal

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  3. Florentino Fdez-Riverola

    1. Computer Science Department, University of Vigo, Vigo, Spain

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  4. Mohd Saberi Mohamad

    1. Institute for Artificial Intelligence and Big Data (AIBIG), Universiti Malaysia Kelantan, Kampus Kota, Kota Bharu, Malaysia

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  5. Roberto Casado-Vara

    1. Biotechnology, Intelligent Systems and Educational Technology (BISITE) Research Group, University of Salamanca, Salamanca, Spain

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  • Highlights the latest research on practical applications of computational biology & bioinformatics
  • Presents the results of the 14th International Conference on Practical Applications of Computational Biology & Bioinformatics, held in L´Aquila, Italy, from June 17 to 19, 2020
  • Discusses applications of computational intelligence with an interdisciplinary character, exploring the interactions between e.g. bioinformatics, chemoinformatics, and systems biology

Part of the book series: Advances in Intelligent Systems and Computing (AISC, volume 1240)

Included in the following conference series:

Conference proceedings info: PACBB 2020.

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Table of contents (21 papers)

  1. Front Matter

    Pages i-xv
    Download chapter PDF

  2. Identification of Antimicrobial Peptides from Macroalgae with Machine Learning

    • Michela Caprani, Orla Slattery, Joan O’Keeffe, John Healy
    Pages 1-11

  3. A Health-Related Study from Food Online Reviews. The Case of Gluten-Free Foods

    • Martín Pérez-Pérez, Anália Lourenço, Gilberto Igrejas, Florentino Fdez-Riverola
    Pages 12-22

  4. The Activity of Bioinformatics Developers and Users in Stack Overflow

    • Roi Pérez-López, Guillermo Blanco, Florentino Fdez-Riverola, Anália Lourenço
    Pages 23-31

  5. ProPythia: A Python Automated Platform for the Classification of Proteins Using Machine Learning

    • Ana Marta Sequeira, Diana Lousa, Miguel Rocha
    Pages 32-41

  6. Inferences on Mycobacterium Leprae Host Immune Response Escape and Antibiotic Resistance Using Genomic Data and GenomeFastScreen

    • Hugo López-Fernández, Cristina P. Vieira, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Jorge Vieira
    Pages 42-50

  7. Compi Hub: A Public Repository for Sharing and Discovering Compi Pipelines

    • Alba Nogueira-Rodríguez, Hugo López-Fernández, Osvaldo Graña-Castro, Miguel Reboiro-Jato, Daniel Glez-Peña
    Pages 51-59

  8. DeepACPpred: A Novel Hybrid CNN-RNN Architecture for Predicting Anti-Cancer Peptides

    • Nathaniel Lane, Indika Kahanda
    Pages 60-69

  9. Preventing Cardiovascular Disease Development Establishing Cardiac Well-Being Indexes

    • Ana Duarte, Orlando Belo
    Pages 70-79

  10. Fuzzy Matching for Cellular Signaling Networks in a Choroidal Melanoma Model

    • Adrián Riesco, Beatriz Santos-Buitrago, Merrill Knapp, Gustavo Santos-García, Emiliano Hernández Galilea, Carolyn Talcott
    Pages 80-90

  11. Towards A More Effective Bidirectional LSTM-Based Learning Model for Human-Bacterium Protein-Protein Interactions

    • Huaming Chen, Jun Shen, Lei Wang, Yaochu Jin
    Pages 91-101

  12. Machine Learning for Depression Screening in Online Communities

    • Alina Trifan, Rui Antunes, José Luís Oliveira
    Pages 102-111

  13. Towards Triclustering-Based Classification of Three-Way Clinical Data: A Case Study on Predicting Non-invasive Ventilation in ALS

    • Diogo Soares, Rui Henriques, Marta Gromicho, Susana Pinto, Mamede de Carvalho, Sara C. Madeira
    Pages 112-122

  14. Searching RNA Substructures with Arbitrary Pseudoknots

    • Michela Quadrini
    Pages 123-133

  15. An Application of Ontological Engineering for Design and Specification of Ontocancro

    • Jéssica A. Bonini, Matheus D. Da Silva, Rafael Pereira, Bruno A. Mozzaquatro, Ricardo G. Martini, Giovani R. Librelotto
    Pages 134-143

  16. Evaluation of the Effect of Cell Parameters on the Number of Microtubule Merotelic Attachments in Metaphase Using a Three-Dimensional Computer Model

    • Maxim A. Krivov, Fazoil I. Ataullakhanov, Pavel S. Ivanov
    Pages 144-154

  17. Reconciliation of Regulatory Data: The Regulatory Networks of Escherichia coli and Bacillus subtilis

    • Diogo Lima, Fernando Cruz, Miguel Rocha, Oscar Dias
    Pages 155-165

  18. A Hybrid of Bat Algorithm and Minimization of Metabolic Adjustment for Succinate and Lactate Production

    • Mei Yen Man, Mohd Saberi Mohamad, Yee Wen Choon, Mohd Arfian Ismail
    Pages 166-175

  19. Robustness of Pathway Enrichment Analysis to Transcriptome-Wide Gene Expression Platform

    • Joanna Zyla, Kinga Leszczorz, Joanna Polanska
    Pages 176-185

  20. Hypoglycemia Prevention Using an Embedded Model Control with a Safety Scheme: In-silico Test

    • Fabian Leon-Vargas, Andres L. Jutinico, Andres Molano-Jimenez
    Pages 186-196
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  1. Practical Applications of Computational Biology & Bioinformatics, 14th International Conference (PACBB 2020)

Keywords

About this book

This book highlights the latest research on practical applications of computational biology and bioinformatics, and addresses emerging experimental and sequencing techniques that are posing new challenges for bioinformatics and computational biology. Successfully applying these techniques calls for new algorithms and approaches from fields such as statistics, data mining, machine learning, optimization, computer science, and artificial intelligence. In response to these challenges, we have seen the rise of a new generation of interdisciplinary scientists with a strong background in the biological and computational sciences.These proceedings include 21 papers covering many different subfields of bioinformatics and computational biology. Focusing on interdisciplinary applications that combine e.g. bioinformatics, chemoinformatics, and system biology, they are intended to promote the collaboration of scientists from different research groups and with different backgrounds (computer scientists, mathematicians, biologists) to reach breakthrough solutions and overcome the challenges outlined above.

Editors and Affiliations

  • Enhanced Regenerative Medicine, Istituto Italiano di Tecnologia, Genoa, Italy

    Gabriella Panuccio

  • Department de Informática, Universidade do Minho, Braga, Portugal

    Miguel Rocha

  • Computer Science Department, University of Vigo, Vigo, Spain

    Florentino Fdez-Riverola

  • Institute for Artificial Intelligence and Big Data (AIBIG), Universiti Malaysia Kelantan, Kampus Kota, Kota Bharu, Malaysia

    Mohd Saberi Mohamad

  • Biotechnology, Intelligent Systems and Educational Technology (BISITE) Research Group, University of Salamanca, Salamanca, Spain

    Roberto Casado-Vara

Bibliographic Information

  • Book Title: Practical Applications of Computational Biology & Bioinformatics, 14th International Conference (PACBB 2020)

  • Editors: Gabriella Panuccio, Miguel Rocha, Florentino Fdez-Riverola, Mohd Saberi Mohamad, Roberto Casado-Vara

  • Series Title: Advances in Intelligent Systems and Computing

  • DOI: https://doi.org/10.1007/978-3-030-54568-0

  • Publisher: Springer Cham

  • eBook Packages: Intelligent Technologies and Robotics, Intelligent Technologies and Robotics (R0)

  • Copyright Information: The Editor(s) (if applicable) and The Author(s), under exclusive license to Springer Nature Switzerland AG 2021

  • Hardcover ISBN: 978-3-030-54567-3Published: 23 July 2020

  • Softcover ISBN: 978-3-030-54570-3Published: 24 July 2021

  • eBook ISBN: 978-3-030-54568-0Published: 22 July 2020

  • Series ISSN: 2194-5357

  • Series E-ISSN: 2194-5365

  • Edition Number: 1

  • Number of Pages: XV, 216

  • Number of Illustrations: 47 b/w illustrations, 44 illustrations in colour

  • Topics: Computational Intelligence, Artificial Intelligence, Bioinformatics

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