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Learning Materials in Biosciences
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Bioimage Data Analysis Workflows

Editors: Miura, Kota, Sladoje, Natasa (Eds.)

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  • Wins readers over with its highly practical approach, instead of using too much theory
  • Open Access
  • Provides non-experts with the know-how to perform image analyses on their own
  • A valuable asset for diverse groups in the life sciences and biomedicine
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  • ISBN 978-3-030-22386-1
  • This book is an open access book, you can download it for free on link.springer.com
Softcover 51,99 €
price for Spain (gross)
  • ISBN 978-3-030-22385-4
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About this Textbook

This Open Access textbook provides students and researchers in the life sciences with essential practical information on how to quantitatively analyze data images. It refrains from focusing on theory, and instead uses practical examples and step-by step protocols to familiarize readers with the most commonly used image processing and analysis platforms such as ImageJ, MatLab and Python. Besides gaining knowhow on algorithm usage, readers will learn how to create an analysis pipeline by scripting language; these skills are important in order to document reproducible image analysis workflows.

The textbook is chiefly intended for advanced undergraduates in the life sciences and biomedicine without a theoretical background in data analysis, as well as for postdocs, staff scientists and faculty members who need to perform regular quantitative analyses of microscopy images.


About the authors

Dr. Kota Miura is a Bioimage Data Analyst and works with various research groups at the EMBL in Heidelberg, Germany. He is also Vice Chair of NEUBIAS (the Network of European Bioimage Analysts).

 

Natasa Sladoje is an Associate Professor at the Centre for Image Analysis, Department of Information Technology at Uppsala University in Sweden and a Professor at the Faculty of Technical Sciences, University of Novi Sad, in Serbia. She is also an Associate Research Professor at the Mathematical Institute of the Serbian Academy of Sciences and Arts.

 


Table of contents (6 chapters)

Table of contents (6 chapters)
  • Workflows and Components of Bioimage Analysis

    Pages 1-7

    Miura, Kota (et al.)

  • Measurements of Intensity Dynamics at the Periphery of the Nucleus

    Pages 9-32

    Miura, Kota

  • 3D Quantitative Colocalisation Analysis

    Pages 33-66

    Cordelières, Fabrice P. (et al.)

  • The NEMO Dots Assembly: Single-Particle Tracking and Analysis

    Pages 67-96

    Tinevez, Jean-Yves (et al.)

  • Introduction to MATLAB

    Pages 97-141

    Nørrelykke, Simon F.

Buy this book

eBook  
  • ISBN 978-3-030-22386-1
  • This book is an open access book, you can download it for free on link.springer.com
Softcover 51,99 €
price for Spain (gross)
  • ISBN 978-3-030-22385-4
  • Free shipping for individuals worldwide
  • Immediate ebook access, if available*, with your print order
  • Usually dispatched within 3 to 5 business days.
  • The final prices may differ from the prices shown due to specifics of VAT rules
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Bibliographic Information

Bibliographic Information
Book Title
Bioimage Data Analysis Workflows
Editors
  • Kota Miura
  • Natasa Sladoje
Series Title
Learning Materials in Biosciences
Copyright
2020
Publisher
Springer International Publishing
Copyright Holder
The Editor(s) (if applicable) and The Author(s)
eBook ISBN
978-3-030-22386-1
DOI
10.1007/978-3-030-22386-1
Softcover ISBN
978-3-030-22385-4
Series ISSN
2509-6125
Edition Number
1
Number of Pages
X, 170
Number of Illustrations
11 b/w illustrations, 58 illustrations in colour
Topics

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