Skip to main content
SpringerLink
Log in

Plant Systems Biology

  • Book
  • © 2009

Overview

Editors:
  1. Dmitry A. Belostotsky
    View editor publications

    You can also search for this editor in PubMed   Google Scholar

  • Authoritative guide to modern plant systems biology approaches
  • Up-to-date compilation, written by leading experts in the field
  • Presents a combination of high throughput and boutique, one-of-a-kind methodologies
  • Covers both experimental and computational/statistical issues in plant systems biology

Part of the book series: Methods in Molecular Biology (MIMB, volume 553)

This is a preview of subscription content, log in via an institution to check access.

Access this book

Log in via an institution
eBook USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access

Licence this eBook for your library

Institutional subscriptions

Table of contents (20 protocols)

  1. Front Matter

    Pages i-xv
    Download chapter PDF

  2. Part I: Systems Biology of Plant Gene Expression

    1. Front Matter

      Pages 1-1
      Download chapter PDF

    2. Gene-Specific and Genome-Wide ChIP Approaches to Study Plant Transcriptional Networks

      • Dmitry A. Belostotsky
      Pages 3-12

    3. Genome-Wide Analysis of RNA-Protein Interactions in Plants

      • Alice Barkan
      Pages 13-37

    4. Whole-Genome Microarrays: Applications and Technical Issues

      • Brian D. Gregory, Dmitry A. Belostotsky
      Pages 39-56

    5. Manipulating Large-Scale Arabidopsis Microarray Expression Data: Identifying Dominant Expression Patterns and Biological Process Enrichment

      • David A. Orlando, Siobhan M. Brady, Jeremy D. Koch, José R. Dinneny, Philip N. Benfey
      Pages 57-77

    6. Applications of Ultra-high-Throughput Sequencing

      • Samuel Fox, Sergei Filichkin, Todd C. Mockler
      Pages 79-108

    7. Isolation of Plant Polysomal mRNA by Differential Centrifugation and Ribosome Immunopurification Methods

      • Angelika Mustroph, Piyada Juntawong, Julia Bailey-Serres
      Pages 109-126

    8. Chromatin Charting: Global Mapping of Epigenetic Effects

      • Chongyuan Luo, Eric Lam
      Pages 127-139

    9. Clone-Based Functional Genomics

      • Annick Bleys, Mansour Karimi, Pierre Hilson
      Pages 141-177

  3. Part II: Networks, Pathways, Statistical Issues, and Novel Computational Tools

    1. Front Matter

      Pages 179-179
      Download chapter PDF

    2. Challenges and Approaches to Statistical Design and Inference in High-Dimensional Investigations

      • Gary L. Gadbury, Karen A. Garrett, David B. Allison
      Pages 181-206

    3. Discrete Dynamic Modeling with Asynchronous Update, or How to Model Complex Systems in the Absence of Quantitative Information

      • Sarah M. Assmann, Réka Albert
      Pages 207-225

    4. Quantification of Variation in Expression Networks

      • Daniel J. Kliebenstein
      Pages 227-245

    5. Co-expression Analysis of Metabolic Pathways in Plants

      • Ann Loraine
      Pages 247-264

    6. Integration of Metabolic Reactions and Gene Regulation

      • Chen-Hsiang Yeang
      Pages 265-285

    7. Applying Word-Based Algorithms: The IMEter

      • Ian F. Korf, Alan B. Rose
      Pages 287-301

  4. Part III: Imaging

    1. Front Matter

      Pages 303-303
      Download chapter PDF

    2. Live-Imaging and Image Processing of Shoot Apical Meristems of Arabidopsis thaliana

      • G. Venugopala Reddy, A. Roy-Chowdhury
      Pages 305-316

    3. Computer Vision as a Tool to Study Plant Development

      • Edgar P. Spalding
      Pages 317-326
Back to top

Keywords

About this book

As a fairly new and expansive area of study, plant systems biology has been approached by scientists from fields as varied as plant physiology and astrophysics, creating a wide variety of techniques and methods to further this vital research. In Plant Systems Biology, expert investigators provide cutting-edge chapters dealing with diverse subjects such as systems biology of plant gene expression to analysis of networks, pathways, specific statistical issues and novel computational tools, imaging-based tools as well as chemical genetic, metabolomic and integrative methods that cannot be easily pigeonholed. As a volume in the highly successful Methods in Molecular Biology™ series, this work provides the kind of detailed description and implementation advice that is crucial for getting optimal results.

Authoritative and comprehensive, Plant Systems Biology is an ideal guide for all researchers who wish to contribute to the evolution of the vibrant field of plant biology.

Reviews

From the reviews: “For researchers, Belostotsky (biological sciences, U. of Missouri-Kansas City) compiles 20 chapters on plant systems biology … . Chapters describe how to identify cellular components, interactions among these components, and quantitative approaches to analyze and model interactions, emergent properties, and dynamics of the networks.” (SciTech Book News, March, 2010)

Bibliographic Information

  • Book Title: Plant Systems Biology

  • Editors: Dmitry A. Belostotsky

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-60327-563-7

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Humana Press 2009

  • Hardcover ISBN: 978-1-60327-562-0Published: 25 August 2009

  • Softcover ISBN: 978-1-61779-751-4Published: 12 July 2012

  • eBook ISBN: 978-1-60327-563-7Published: 09 July 2009

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XVI, 408

  • Number of Illustrations: 41 b/w illustrations, 2 illustrations in colour

  • Topics: Plant Sciences, Plant Genetics and Genomics, Biochemistry, general, Plant Biochemistry, Metabolomics

Publish with us

Policies and ethics

Back to top

Search

Navigation