- Includes cutting-edge methods and protocols
- Provides step-by-step detail essential for reproducible results
- Contains key notes and implementation advice from the experts
Buy this book
- About this book
-
This volume introduces software used for gene prediction with focus on eukaryotic genomes. The chapters in this book describe software and web server usage as applied in common use-cases, and explain ways to simplify re-annotation of long available genome assemblies. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary computational requirements, step-by-step, readily reproducible computational protocols, and tips on troubleshooting and avoiding known pitfalls.
Cutting-edge and thorough, Gene Prediction: Methods and Protocols is a valuable resource for researchers and research groups working on the assembly and annotation of single species or small groups of species.
Chapter 3 is available open access under a CC BY 4.0 license via link.springer.com.
- Table of contents (18 chapters)
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tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences
Pages 1-14
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Predicting RNA Families in Nucleotide Sequences Using StructRNAfinder
Pages 15-27
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Structural and Functional Annotation of Eukaryotic Genomes with GenSAS
Pages 29-51
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Practical Guide for Fungal Gene Prediction from Genome Assembly and RNA-Seq Reads by FunGAP
Pages 53-64
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Whole-Genome Annotation with BRAKER
Pages 65-95
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Table of contents (18 chapters)
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Bibliographic Information
- Bibliographic Information
-
- Book Title
- Gene Prediction
- Book Subtitle
- Methods and Protocols
- Editors
-
- Martin Kollmar
- Series Title
- Methods in Molecular Biology
- Series Volume
- 1962
- Copyright
- 2019
- Publisher
- Humana Press
- Copyright Holder
- Springer Science+Business Media, LLC, part of Springer Nature
- eBook ISBN
- 978-1-4939-9173-0
- DOI
- 10.1007/978-1-4939-9173-0
- Hardcover ISBN
- 978-1-4939-9172-3
- Series ISSN
- 1064-3745
- Edition Number
- 1
- Number of Pages
- XI, 284
- Number of Illustrations
- 5 b/w illustrations, 49 illustrations in colour
- Topics
