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Advances in Bioinformatics and Computational Biology

15th Brazilian Symposium on Bioinformatics, BSB 2022, Buzios, Brazil, September 21–23, 2022, Proceedings

  • Conference proceedings
  • © 2022

Overview

Editors:
  1. Nicole M. Scherer

    1. Instituto Nacional de Câncer, Rio de Janeiro, Brazil

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  2. Raquel C. de Melo-Minardi

    1. Universidade Federal de Minas Gerais, Belo Horizonte, Brazil

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    You can also search for this editor in PubMed   Google Scholar

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 13523)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: BSB 2022.

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Table of contents (17 papers)

  1. Front Matter

    Pages i-xii
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  2. BDDBlast—A Memory Efficient Architecture for Pairwise Alignments

    • Demian Bueno de Oliveira, Alessandra Faria-Campos, Sérgio Campos
    Pages 1-13

  3. Scientific Workflow Interactions: An Application to Cancer Gene Identification

    • Diogo Munaro Vieira, Alexandre Heine, Elvismary Molina de Armas, Cristóvão Antunes de Lanna, Mariana Boroni, Sérgio Lifschitz
    Pages 14-19

  4. Accuracy of RNA Structure Prediction Depends on the Pseudoknot Grammar

    • Dustyn Eggers, Christian Höner zu Siederdissen, Peter F. Stadler
    Pages 20-31

  5. Comparison of Machine Learning Pipelines for Gene Expression Matrices

    • Mateus Devino, Kele Belloze, Eduardo Bezerra
    Pages 32-37

  6. Evaluating Machine Learning Models for Essential Protein Identification

    • Jessica da Silva Costa, Jorge Gabriel Rodrigues, Kele Belloze
    Pages 38-43

  7. Study on the Complexity of Omics Data: An Analysis for Cancer Survival Prediction

    • Carlos Daniel Andrade, Thomas Fontanari, Mariana Recamonde-Mendoza
    Pages 44-55

  8. Identifying Large Scale Conformational Changes in Proteins Through Distance Maps and Convolutional Networks

    • Lucas Moraes dos Santos, Raquel C. de Melo Minardi
    Pages 56-67

  9. Clustering Analysis Indicates Genes Involved in Progesterone-Induced Oxidative Stress in Pancreatic Beta Cells: Insights to Understanding Gestational Diabetes

    • Lara Marinelli Dativo dos Santos, Patricia Rufino Oliveira, Anna Karenina Azevedo Martins
    Pages 68-78

  10. An External Memory Approach for Large Genome De Novo Assembly

    • Elvismary Molina de Armas, Sérgio Lifschitz
    Pages 79-90

  11. Computational Methodology for Discovery of Potential Inhibitory Peptides

    • Vivian Morais Paixão, Raquel C. de Melo Minardi
    Pages 91-96

  12. A Non Exhaustive Search of Exhaustiveness

    • Letícia Kristian Silva Cecotti, Maurício Dorneles Caldeira Balboni, Oscar Emilio Arrúa Arce, Karina dos Santos Machado, Adriano Velasque Werhli
    Pages 97-108

  13. Search for Zinc Complexes with High Affinity in Pyrazinamidase from Mycobacterium Tuberculosis Resistant to Pyrazinamide

    • Jesus Antonio Alvarado-Huayhuaz, Daniel Alonso Talaverano-Rojas, Reneé Isabel Huamán Quispe, Maurício Dorneles Caldeira Balboni, Oscar Emilio Arrúa Arce, Adriano Velasque Werhli et al.
    Pages 109-120

  14. How Bioinformatics Can Aid Biodiversity Description: The Case of a Probable New Species of Orthonychiurus (Collembola, Hexapoda)

    • Maithe Gaspar Pontes Magalhaes, Marilia Alves Figueira Melo, Gabriel Costa Queiroz, Aline dos Santos Moreira, Wim Degrave, Thiago Estevam Parente
    Pages 121-127

  15. Phylogeny Trees as a Tool to Compare Inference Algorithms of Orthologs

    • Rafael Oliveira, Saul de Castro Leite, Fernanda Nascimento Almeida
    Pages 128-139

  16. Water Pollution Shifts the Soil and Fish Gut Microbiomes Increasing the Circulation of Antibiotic Resistance Genes in the Environment

    • Maithe Gaspar Pontes Magalhaes, Marilia Alves Figueira Melo, Aline dos Santos Moreira, Wim Degrave, Thiago Estevam Parente
    Pages 140-146

  17. A 1.375-Approximation Algorithm for Sorting by Transpositions with Faster Running Time

    • Alexsandro Oliveira Alexandrino, Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
    Pages 147-157

  18. In Silico Analysis of the Genomic Potential for the Production of Specialized Metabolites of Ten Strains of the  Bacillales Order Isolated from the Soil of the Federal District, Brazil

    • Felipe de Araújo Mesquita, Waldeyr Mendes Cordeiro da Silva, Marlene Teixeira De-Souza
    Pages 158-163

  19. Back Matter

    Pages 165-165
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Other volumes

  1. Advances in Bioinformatics and Computational Biology

Keywords

About this book

This book constitutes the proceedings of the 15th Brazilian Symposium on Bioinformatics on Advances in Bioinformatics and Computational Biology, BSB 2022, which took place in Buzios, Brazil, in  September 2022. 


The 10 full papers and 7 short papers presented in this volume were carefully reviewed and selected from 23 submissions. The papers focus on bioinformatics, computational biology, Biological Databases, Biological Networks, Cheminformatics, Evolutionary Genomics, Computational Proteomics, Systems Biology, Drug Design, Genomics, Machine Learning applications in Bioinformatics, Metagenomics, Molecular Docking and Modeling, Molecular Evolution and Phylogenetics, Protein Structure and Modeling, Proteomics, Transcriptomics, Single-Cell Analysis, Workflows in Bioinformatics. 

Editors and Affiliations

  • Instituto Nacional de Câncer, Rio de Janeiro, Brazil

    Nicole M. Scherer

  • Universidade Federal de Minas Gerais, Belo Horizonte, Brazil

    Raquel C. de Melo-Minardi

Bibliographic Information

  • Book Title: Advances in Bioinformatics and Computational Biology

  • Book Subtitle: 15th Brazilian Symposium on Bioinformatics, BSB 2022, Buzios, Brazil, September 21–23, 2022, Proceedings

  • Editors: Nicole M. Scherer, Raquel C. de Melo-Minardi

  • Series Title: Lecture Notes in Computer Science

  • DOI: https://doi.org/10.1007/978-3-031-21175-1

  • Publisher: Springer Cham

  • eBook Packages: Computer Science, Computer Science (R0)

  • Copyright Information: The Editor(s) (if applicable) and The Author(s), under exclusive license to Springer Nature Switzerland AG 2022

  • Softcover ISBN: 978-3-031-21174-4Published: 16 December 2022

  • eBook ISBN: 978-3-031-21175-1Published: 15 December 2022

  • Series ISSN: 0302-9743

  • Series E-ISSN: 1611-3349

  • Edition Number: 1

  • Number of Pages: XII, 165

  • Number of Illustrations: 18 b/w illustrations, 41 illustrations in colour

  • Topics: Bioinformatics, Artificial Intelligence, Computer Applications

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