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Advances in Bioinformatics and Computational Biology

14th Brazilian Symposium on Bioinformatics, BSB 2021, Virtual Event, November 22–26, 2021, Proceedings

  • Conference proceedings
  • © 2021

Overview

Editors:
  1. Peter F. Stadler

    1. Leipzig University, Leipzig, Germany

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  2. Maria Emilia M. T. Walter

    1. University of Brasília, Brasilia, Brazil

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  3. Maribel Hernandez-Rosales

    1. CINVESTAV, Irapuato, Mexico

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  4. Marcelo M. Brigido

    1. Universidade de Brasilia, Brasilia, Brazil

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 13063)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: BSB 2021.

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Table of contents (15 papers)

  1. Front Matter

    Pages i-xii
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  2. Applied Bioinformatics and Computational Biology

    1. Front Matter

      Pages 1-1
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    2. Comparative Transcriptome Profiling of Maytenus ilicifolia Root and Leaf

      • Mariana Marchi Santoni, João Vítor Félix de Lima, Keylla Utherdyany Bicalho, Tatiana Maria de Souza Moreira, Sandro Roberto Valentini, Maysa Furlan et al.
      Pages 3-14

    3. Hypusine Plays a Role in the Translation of Short mRNAs and Mediates the Polyamine and Autophagy Pathways in Saccharomyces Cerevisiae

      • Ana Carolina Silva Paiva, Fernanda Manaia Demarqui, Mariana Marchi Santoni, Sandro Roberto Valentini, Cleslei Fernando Zanelli
      Pages 15-25

    4. Topological Characterization of Cancer Driver Genes Using Reactome Super Pathways Networks

      • Rodrigo Henrique Ramos, Jorge Francisco Cutigi, Cynthia de Oliveira Lage Ferreira, Adenilso Simao
      Pages 26-37

  3. Bioinformatics and Computational Biology

    1. Front Matter

      Pages 39-39
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    2. CellHeap: A Workflow for Optimizing COVID-19 Single-Cell RNA-Seq Data Processing in the Santos Dumont Supercomputer

      • Vanessa S. Silva, Maiana O. C. Costa, Maria Clicia S. Castro, Helena S. Silva, Maria Emilia M. T. Walter, Alba C. M. A. Melo et al.
      Pages 41-52

    3. Combining Orthology and Xenology Data in a Common Phylogenetic Tree

      • Marc Hellmuth, Mira Michel, Nikolai N. Nøjgaard, David Schaller, Peter F. Stadler
      Pages 53-64

    4. ContFree-NGS: Removing Reads from Contaminating Organisms in Next Generation Sequencing Data

      • Felipe Vaz Peres, Diego Mauricio Riaño-Pachón
      Pages 65-68

    5. Deep Learning-Based COVID-19 Diagnostics of Low-Quality CT Images

      • Daniel Ferber, Felipe Vieira, João Dalben, Mariana Ferraz, Nicholas Sato, Gabriel Oliveira et al.
      Pages 69-80

    6. Feature Importance Analysis of Non-coding DNA/RNA Sequences Based on Machine Learning Approaches

      • Breno Lívio Silva de Almeida, Alvaro Pedroso Queiroz, Anderson Paulo Avila Santos, Robson Parmezan Bonidia, Ulisses Nunes da Rocha, Danilo Sipoli Sanches et al.
      Pages 81-92

    7. Heuristics for Cycle Packing of Adjacency Graphs for Genomes with Repeated Genes

      • Gabriel Siqueira, Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Zanoni Dias
      Pages 93-105

    8. PIMBA: A PIpeline for MetaBarcoding Analysis

      • Renato R. M. Oliveira, Raíssa Silva, Gisele L. Nunes, Guilherme Oliveira
      Pages 106-116

  4. Short Papers

    1. Front Matter

      Pages 117-117
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    2. CEvADA: Co-Evolution Analysis Data Archive

      • Neli José da Fonseca Júnior, Marcelo Querino Lima Afonso, Lucas Bleicher
      Pages 119-124

    3. FluxPRT: An Adaptable and Extensible Proteomics LIMS

      • Elizabeth Regina Alfaro-Espinoza, Lucas Ferreira Paiva, Alessandra C. Faria-Campos, Maria Cristina Baracat-Pereira, Sérgio Vale Aguiar Campos
      Pages 125-130

    4. MathPIP: Classification of Proinflammatory Peptides Using Mathematical Descriptors

      • João Pedro Uchôa Cavalcante, Anderson Cardoso Gonçalves, Robson Parmezan Bonidia, Danilo Sipoli Sanches, André Carlos Ponce de Leon Ferreira de Carvalho
      Pages 131-136

    5. Metagenomic Insights of the Microbial Community from a Polluted River in Brazil 2020

      • Carolina O. P. Gil, Larissa Macedo Pinto, Flavio F. Nobre, Cristiane Thompson, Fabiano Thompson, Diogo Antonio Tschoke
      Pages 137-144

    6. Mesoscopic Evaluation of DNA Mismatches in PCR Primer-Target Hybridisation to Detect SARS-CoV-2 Variants of Concern

      • Pâmella Miranda, Vivianne Basílio Barbosa, Gerald Weber
      Pages 145-150

  5. Back Matter

    Pages 151-151
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Other volumes

  1. Advances in Bioinformatics and Computational Biology

Keywords

About this book

This book constitutes the refereed proceedings of the Brazilian Symposium on Bioinformatics, BSB 2021, held in November 2021. Due to COVID-19 pandemic the conference was held virtually
The 10 revised full papers and 5 short papers were carefully reviewed and selected from 28 submissions. The papers address a broad range of current topics in computational biology and bioinformatics.

Editors and Affiliations

  • Leipzig University, Leipzig, Germany

    Peter F. Stadler

  • University of Brasília, Brasilia, Brazil

    Maria Emilia M. T. Walter

  • CINVESTAV, Irapuato, Mexico

    Maribel Hernandez-Rosales

  • Universidade de Brasilia, Brasilia, Brazil

    Marcelo M. Brigido

Bibliographic Information

  • Book Title: Advances in Bioinformatics and Computational Biology

  • Book Subtitle: 14th Brazilian Symposium on Bioinformatics, BSB 2021, Virtual Event, November 22–26, 2021, Proceedings

  • Editors: Peter F. Stadler, Maria Emilia M. T. Walter, Maribel Hernandez-Rosales, Marcelo M. Brigido

  • Series Title: Lecture Notes in Computer Science

  • DOI: https://doi.org/10.1007/978-3-030-91814-9

  • Publisher: Springer Cham

  • eBook Packages: Computer Science, Computer Science (R0)

  • Copyright Information: Springer Nature Switzerland AG 2021

  • Softcover ISBN: 978-3-030-91813-2Published: 21 November 2021

  • eBook ISBN: 978-3-030-91814-9Published: 23 November 2021

  • Series ISSN: 0302-9743

  • Series E-ISSN: 1611-3349

  • Edition Number: 1

  • Number of Pages: XII, 151

  • Number of Illustrations: 6 b/w illustrations, 38 illustrations in colour

  • Topics: Bioinformatics, Artificial Intelligence, Computer Applications, Computer Communication Networks

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