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Advances in Bioinformatics and Computational Biology

13th Brazilian Symposium on Bioinformatics, BSB 2020, São Paulo, Brazil, November 23–27, 2020, Proceedings

  • Conference proceedings
  • © 2020

Overview

Editors:
  1. João C. Setubal

    1. University of São Paulo, São Paulo, Brazil

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    You can also search for this editor in PubMed   Google Scholar

  2. Waldeyr Mendes Silva

    1. Instituto Federal de Goiás, Formosa, Brazil

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    You can also search for this editor in PubMed   Google Scholar

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 12558)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: BSB 2020.

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Table of contents (25 papers)

  1. Front Matter

    Pages i-xiii
    Download chapter PDF

  2. A Classification of de Bruijn Graph Approaches for De Novo Fragment Assembly

    • Elvismary Molina de Armas, Maristela Holanda, Daniel de Oliveira, Nalvo F. Almeida, Sérgio Lifschitz
    Pages 1-12

  3. Redundancy Treatment of NGS Contigs in Microbial Genome Finishing with Hashing-Based Approach

    • Marcus Braga, Kenny Pinheiro, Fabrício Araújo, Fábio Miranda, Artur Silva, Rommel Ramos
    Pages 13-24

  4. Efficient Out-of-Core Contig Generation

    • Julio Omar Prieto Entenza, Edward Hermann Haeusler, Sérgio Lifschitz
    Pages 25-37

  5. In silico Pathogenomic Analysis of Corynebacterium Pseudotuberculosis Biovar Ovis

    • Iago Rodrigues Blanco, Carlos Leonardo Araújo, Adriana Carneiro Folador
    Pages 38-49

  6. Assessing the Sex-Related Genomic Composition Difference Using a k-mer-Based Approach: A Case of Study in Arapaima gigas (Pirarucu)

    • Renata Lilian Dantas Cavalcante, Jose Miguel Ortega, Jorge Estefano Santana de Souza, Tetsu Sakamoto
    Pages 50-56

  7. COVID-19 X-ray Image Diagnostic with Deep Neural Networks

    • Gabriel Oliveira, Rafael Padilha, André Dorte, Luis Cereda, Luiz Miyazaki, Maurício Lopes et al.
    Pages 57-68

  8. Classification of Musculoskeletal Abnormalities with Convolutional Neural Networks

    • Guilherme Tiaki Sassai Sato, Leodécio Braz da Silva Segundo, Zanoni Dias
    Pages 69-80

  9. Combining Mutation and Gene Network Data in a Machine Learning Approach for False-Positive Cancer Driver Gene Discovery

    • Jorge Francisco Cutigi, Renato Feijo Evangelista, Rodrigo Henrique Ramos, Cynthia de Oliveira Lage Ferreira, Adriane Feijo Evangelista, Andre C. P. L. F. de Carvalho et al.
    Pages 81-92

  10. Unraveling the Role of Nanobodies Tetrad on Their Folding and Stability Assisted by Machine and Deep Learning Algorithms

    • Matheus Vitor Ferreira Ferraz, Wenny Camilla dos Santos Adan, Roberto Dias Lins
    Pages 93-104

  11. Experiencing DfAnalyzer for Runtime Analysis of Phylogenomic Dataflows

    • Luiz Gustavo Dias, Marta Mattoso, Bruno Lopes, Daniel de Oliveira
    Pages 105-116

  12. Sorting by Reversals and Transpositions with Proportion Restriction

    • Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
    Pages 117-128

  13. Heuristics for Breakpoint Graph Decomposition with Applications in Genome Rearrangement Problems

    • Pedro Olímpio Pinheiro, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Cid Carvalho de Souza, Zanoni Dias
    Pages 129-140

  14. Center Genome with Respect to the Rank Distance

    • Priscila Biller, João Paulo Pereira Zanetti, João Meidanis
    Pages 141-149

  15. ImTeNet: Image-Text Classification Network for Abnormality Detection and Automatic Reporting on Musculoskeletal Radiographs

    • Leodécio Braz, Vinicius Teixeira, Helio Pedrini, Zanoni Dias
    Pages 150-161

  16. A Scientometric Overview of Bioinformatics Tools in the Pseudomonas Putida Genome Study

    • Alex Batista Trentin, Beatriz Thomas Metzner, Glecio Oliveira Barros, Deborah Catharine de Assis Leite
    Pages 162-167

  17. Polysome-seq as a Measure of Translational Profile from Deoxyhypusine Synthase Mutant in Saccharomyces cerevisiae

    • Fernanda Manaia Demarqui, Ana Carolina Silva Paiva, Mariana Marchi Santoni, Tatiana Faria Watanabe, Sandro Roberto Valentini, Cleslei Fernando Zanelli
    Pages 168-179

  18. Anti-CD3 Stimulated T Cell Transcriptome Reveals Novel ncRNAs and Correlates with a Suppressive Profile

    • Manuela M. do Almo, Isabel G. Sousa, Waldeyr Mendes Cordeiro da Silva, Thomas Gatter, Peter F. Stadler, Steve Hoffmann et al.
    Pages 180-191

  19. A Simplified Complex Network-Based Approach to mRNA and ncRNA Transcript Classification

    • Murilo Montanini Breve, Fabrício Martins Lopes
    Pages 192-203

  20. A Systems Biology Driven Approach to Map the EP300 Interactors Using Comprehensive Protein Interaction Network

    • Shivananda Kandagalla, Maria Grishina, Vladimir Potemkin, Sharath Belenahalli Shekarappa, Pavan Gollapalli
    Pages 204-214
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Other volumes

  1. Advances in Bioinformatics and Computational Biology

Keywords

About this book

This book constitutes the refereed proceedings of the Brazilian Symposium on Bioinformatics, BSB 2020, held in São Paulo, Brazil, in November 2020. Due to COVID-19 pandemic the conference was held virtually
The 20 revised full papers and 5 short papers were carefully reviewed and selected from 45 submissions. The papers address a broad range of current topics in computational biology and bioinformatics.


Editors and Affiliations

  • University of São Paulo, São Paulo, Brazil

    João C. Setubal

  • Instituto Federal de Goiás, Formosa, Brazil

    Waldeyr Mendes Silva

Bibliographic Information

  • Book Title: Advances in Bioinformatics and Computational Biology

  • Book Subtitle: 13th Brazilian Symposium on Bioinformatics, BSB 2020, São Paulo, Brazil, November 23–27, 2020, Proceedings

  • Editors: João C. Setubal, Waldeyr Mendes Silva

  • Series Title: Lecture Notes in Computer Science

  • DOI: https://doi.org/10.1007/978-3-030-65775-8

  • Publisher: Springer Cham

  • eBook Packages: Computer Science, Computer Science (R0)

  • Copyright Information: Springer Nature Switzerland AG 2020

  • Softcover ISBN: 978-3-030-65774-1Published: 20 December 2020

  • eBook ISBN: 978-3-030-65775-8Published: 19 December 2020

  • Series ISSN: 0302-9743

  • Series E-ISSN: 1611-3349

  • Edition Number: 1

  • Number of Pages: XIII, 272

  • Number of Illustrations: 20 b/w illustrations, 63 illustrations in colour

  • Topics: Bioinformatics

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