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Genomics of Cereal Crops

  • Book
  • © 2022

Overview

Editors:
  1. Shabir Hussain Wani

    1. Sher-e-Kashmir University of Agricultura, KHUDWANI ANANTNAG, India

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    You can also search for this editor in PubMed   Google Scholar

  2. Anuj Kumar

    1. Dalhousie University, Halifax, Canada

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    You can also search for this editor in PubMed   Google Scholar

  • Includes cutting-edge methods and protocols
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts

Part of the book series: Springer Protocols Handbooks (SPH)

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Table of contents (19 protocols)

  1. Front Matter

    Pages i-xiii
    Download chapter PDF

  2. An Update on Progress and Challenges of Crop Genomes

    • P. Hima Kumar, N. Urmilla, M. Lakshmi Narasu, S. Anil Kumar
    Pages 1-11

  3. Updates on Genomic Resources for Crop Improvement

    • Aditya Narayan, Pragya Chitkara, Shailesh Kumar
    Pages 13-29

  4. Next-Generation Sequencing Technologies: Approaches and Applications for Crop Improvement

    • Anupam Singh, Goriparthi Ramakrishna, Tanvi Kaila, Swati Saxena, Sandhya Sharma, Ambika B. Gaikwad et al.
    Pages 31-94

  5. Check CRISPR Editing Events in Transgenic Wheat with Next-Generation Sequencing

    • Junli Zhang
    Pages 95-106

  6. Virus Induced Gene Silencing: A Tool to Study Gene Function in Wheat

    • Gaganpreet Kaur Dhariwal, Raman Dhariwal, Michele Frick, André Laroche
    Pages 107-155

  7. Common Genomic Tools and Their Implementations in Genetic Improvement of Cereals

    • Megha Katoch, Ajay Kumar, Simranjeet Kaur, Anuj Rana, Avneesh Kumar
    Pages 157-174

  8. Protocol for Identification and Annotation of Differentially Expressed Genes Using Reference-Based Transcriptomic Approach

    • Jyotika Bhati, Himanshu Avashthi, Anuj Kumar, Sayanti Guha Majumdar, Neeraj Budhlakoti, Dwijesh Chandra Mishra
    Pages 175-193

  9. Transcriptome Data Analysis Using a De Novo Assembly Approach

    • Himanshu Avashthi, Jyotika Bhati, Shikha Mittal, Ambuj Srivastava, Neeraj Budhlakoti, Anuj Kumar et al.
    Pages 195-209

  10. Protocol for In Silico Identification and Functional Annotation of Abiotic Stress–Responsive MicroRNAs in Crop Plants

    • Anuj Kumar, Mansi Sharma, Tinku Gautam, Prabina Kumar Meher, Jyotika Bhati, Himanshu Avashthi et al.
    Pages 211-226

  11. Functional Annotation of miRNAs in Rice Using ARMOUR

    • Neeti Sanan-Mishra, Kavita Goswami
    Pages 227-234

  12. Identification of ceRNAs in Cereal Crops : A Computational Approach

    • Tinku Gautam, Hemant Sharma, Rakhi Singh, Anuj Kumar
    Pages 235-243

  13. Genotyping-by-Sequencing (GBS ) Method for Accelerating Marker-Assisted Selection (MAS) Program

    • Laavanya Rayaprolu, Santosh P. Deshpande, Rajeev Gupta
    Pages 245-257

  14. Genomic Selection Using Bayesian Methods: Models, Software, and Application

    • Prabina Kumar Meher, Anuj Kumar, Sukanta Kumar Pradhan
    Pages 259-269

  15. Approaches of Single-Cell Analysis in Crop Improvement

    • Upasna Srivastava, Satendra Singh
    Pages 271-294

  16. Genome-Wide Association Study (GWAS) for Trait Analysis in Crops

    • Meenu Kumari, Lakesh Muduli, Prabina Kumar Meher, Sukanta Kumar Pradhan
    Pages 295-307

  17. QTL Interval Mapping for Agronomic and Quality Traits in Crops

    • Vandana Jaiswal, Vijay Gahlaut, Sanjay Kumar
    Pages 309-324

  18. Whole-Genome Bisulfite Sequencing for Detection of DNA Methylation in Crops

    • Vijay Gahlaut, Vandana Jaiswal, Sanjay Kumar
    Pages 325-334

  19. Tools and Techniques for Genomic Imprinting

    • Neeraj Budhlakoti, Sayanti Guha Majumdar, Amar Kant Kushwaha, Chirag Maheshwari, Muzaffar Hasan, D. C. Mishra et al.
    Pages 335-346

  20. Computational Methods for Receptor–Metabolite Interaction Studies in Crops

    • Anu Dalal, Ankit Singh, Gourav Choudhir, Sushil Kumar, Anuj Kumar
    Pages 347-358
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Keywords

About this book

This volume details different genomic methods and resources to explore cereal genomics. Chapters guide readers through crop genomes, Next Generation Sequencing (NGS) technologies, protocol for CRISPR editing, transgenic wheat, NGS approach, virus induced gene silencing (VIGS), genomic tools, computational prediction of ncRNAs (miRNAs & ceRNAs) in cereal crops, genotyping-by-sequencing (GBS), Bayesian method, single cell sequencing, genome-wide association study (GWAS), QTL interval mapping, whole genome bisulfite sequencing, genome imprinting, and methods for study the receptor-metabolite interaction.

 

Authoritative and cutting-edge, Genomics of Cereal Crops aims to be a useful and practical guide to new researchers and experts looking to expand their knowledge. 

Editors and Affiliations

  • Sher-e-Kashmir University of Agricultura, KHUDWANI ANANTNAG, India

    Shabir Hussain Wani

  • Dalhousie University, Halifax, Canada

    Anuj Kumar

Bibliographic Information

  • Book Title: Genomics of Cereal Crops

  • Editors: Shabir Hussain Wani, Anuj Kumar

  • Series Title: Springer Protocols Handbooks

  • DOI: https://doi.org/10.1007/978-1-0716-2533-0

  • Publisher: Humana New York, NY

  • eBook Packages: Springer Protocols

  • Copyright Information: The Editor(s) (if applicable) and The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature 2022

  • Hardcover ISBN: 978-1-0716-2532-3Published: 14 June 2022

  • Softcover ISBN: 978-1-0716-2535-4Published: 14 June 2023

  • eBook ISBN: 978-1-0716-2533-0Published: 13 June 2022

  • Series ISSN: 1949-2448

  • Series E-ISSN: 1949-2456

  • Edition Number: 1

  • Number of Pages: XIII, 362

  • Number of Illustrations: 1 b/w illustrations

  • Topics: Genetics and Genomics

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