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Research in Computational Molecular Biology

16th Annual International Conference, RECOMB 2012, Barcelona, Spain, April 21-24, 2012. Proceedings

  • Conference proceedings
  • © 2012

Overview

Editors:
  1. Benny Chor

    1. Computer Science Department, Tel-Aviv University, Tel-Aviv, Israel

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 7262)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

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Conference proceedings info: RECOMB 2012.

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Table of contents (37 papers)

  1. Front Matter

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  2. Protein Structure by Semidefinite Facial Reduction

    • Babak Alipanahi, Nathan Krislock, Ali Ghodsi, Henry Wolkowicz, Logan Donaldson, Ming Li
    Pages 1-11

  3. Ancestry Inference in Complex Admixtures via Variable-Length Markov Chain Linkage Models

    • Sivan Bercovici, Jesse M. Rodriguez, Megan Elmore, Serafim Batzoglou
    Pages 12-28

  4. Charge Group Partitioning in Biomolecular Simulation

    • Stefan Canzar, Mohammed El-Kebir, René Pool, Khaled Elbassioni, Alpesh K. Malde, Alan E. Mark et al.
    Pages 29-43

  5. Increased Methylation Variation in Epigenetic Domains across Cancer Types

    • Hector Corrada Bravo
    Pages 44-44

  6. Estimating the Accuracy of Multiple Alignments and its Use in Parameter Advising

    • Dan F. DeBlasio, Travis J. Wheeler, John D. Kececioglu
    Pages 45-59

  7. Quantifying the Dynamics of Coupled Networks of Switches and Oscillators

    • Matthew R. Francis, Elana J. Fertig
    Pages 60-61

  8. lobSTR: A Short Tandem Repeat Profiler for Personal Genomes

    • Melissa Gymrek, David Golan, Saharon Rosset, Yaniv Erlich
    Pages 62-63

  9. Hap-seq: An Optimal Algorithm for Haplotype Phasing with Imputation Using Sequencing Data

    • Dan He, Buhm Han, Eleazar Eskin
    Pages 64-78

  10. Ballast: A Ball-Based Algorithm for Structural Motifs

    • Lu He, Fabio Vandin, Gopal Pandurangan, Chris Bailey-Kellogg
    Pages 79-93

  11. Evolution of Genome Organization by Duplication and Loss: An Alignment Approach

    • Patrick Holloway, Krister Swenson, David Ardell, Nadia El-Mabrouk
    Pages 94-112

  12. LoopWeaver – Loop Modeling by the Weighted Scaling of Verified Proteins

    • Daniel Holtby, Shuai Cheng Li, Ming Li
    Pages 113-126

  13. A Robust Method for Transcript Quantification with RNA-seq Data

    • Yan Huang, Yin Hu, Corbin D. Jones, James N. MacLeod, Derek Y. Chiang, Yufeng Liu et al.
    Pages 127-147

  14. Modeling the Breakage-Fusion-Bridge Mechanism: Combinatorics and Cancer Genomics

    • Marcus Kinsella, Vineet Bafna
    Pages 148-162

  15. TrueSight: Self-training Algorithm for Splice Junction Detection Using RNA-seq

    • Yang Li, Hong-Mei Li, Paul Burns, Mark Borodovsky, Gene E. Robinson, Jian Ma
    Pages 163-164

  16. Synthetic Sequence Design for Signal Location Search

    • Yaw-Ling Lin, Charles Ward, Steven Skiena
    Pages 165-179

  17. The Three-Dimensional Architecture of a Bacterial Genome and Its Alteration by Genetic Perturbation

    • Marc A. Marti-Renom
    Pages 180-180

  18. Discovery of Complex Genomic Rearrangements in Cancer Using High-Throughput Sequencing

    • Andrew McPherson, Chunxiao Wu, Alexander Wyatt, Sohrab Shah, Colin Collins, S. Cenk Sahinalp
    Pages 181-182

  19. Network-Based Prediction and Analysis of HIV Dependency Factors

    • T. M. Murali, Matthew D. Dyer, David Badger, Brett M. Tyler, Michael G. Katze
    Pages 183-183

  20. Structure-Guided Deimmunization of Therapeutic Proteins

    • Andrew S. Parker, Karl E. Griswold, Chris Bailey-Kellogg
    Pages 184-198
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Other volumes

  1. Research in Computational Molecular Biology

Keywords

About this book

This book constitutes the refereed proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB 2012, held in Barcelona, Spain, in April 2012. The 31 revised full papers presented together with 5 keynote lectures were carefully reviewed and selected from 200 submissions. The papers feature current research in all areas of computational molecular biology, including: molecular sequence analysis; recognition of genes and regulatory elements; molecular evolution; protein structure; structural genomics; analysis of gene expression; biological networks; sequencing and genotyping technologies; drug design; probabilistic and combinatorial algorithms; systems biology; computational proteomics; structural and functional genomics; information systems for computational biology and imaging.

Editors and Affiliations

  • Computer Science Department, Tel-Aviv University, Tel-Aviv, Israel

    Benny Chor

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