Skip to main content
  • Conference proceedings
  • © 2012

6th International Conference on Practical Applications of Computational Biology & Bioinformatics

  • Latest research on Practical Applications of Computational Biology & Bioinformatics
  • Results of the 6th International Conference on Practical
  • Applications of Computational Biology & Bioinformatics
  • PACBB held on 28-30th March 2012 in Salamanca, Spain
  • Written by leading experts in the field

Part of the book series: Advances in Intelligent and Soft Computing (AINSC, volume 154)

Buy it now

Buying options

eBook USD 129.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access

This is a preview of subscription content, log in via an institution to check for access.

Table of contents (32 papers)

  1. Front Matter

    Pages 1-12
  2. Parallel Spectral Clustering for the Segmentation of cDNA Microarray Images

    • Sandrine Mouysset, Ronan Guivarch, Joseph Noailles, Daniel Ruiz
    Pages 1-9
  3. Prognostic Prediction Using Clinical Expression Time Series: Towards a Supervised Learning Approach Based on Meta-biclusters

    • André V. Carreiro, Artur J. Ferreira, Mário A. T. Figueiredo, Sara C. Madeira
    Pages 11-20
  4. Identification of Regulatory Binding Sites on mRNA Using in Vivo Derived Informations and SVMs

    • Carmen Maria Livi, Luc Paillard, Enrico Blanzieri, Yann Audic
    Pages 33-41
  5. Parameter Influence in Genetic Algorithm Optimization of Support Vector Machines

    • Paulo Gaspar, Jaime Carbonell, José Luís Oliveira
    Pages 43-51
  6. Biological Knowledge Integration in DNA Microarray Gene Expression Classification Based on Rough Set Theory

    • D. Calvo-Dmgz, J. F. Galvez, Daniel Glez-Peña, Florentino Fdez-Riverola
    Pages 53-61
  7. ASAP: An Automated System for Scientific Literature Search in PubMed Using Web Agents

    • Carlos Carvalhal, Sérgio Deusdado, Leonel Deusdado
    Pages 73-78
  8. Case-Based Reasoning to Classify Endodontic Retreatments

    • Livia Campo, Vicente Vera, Enrique Garcia, Juan F. De Paz, Juan M. Corchado
    Pages 79-86
  9. Sliced Model Checking for Phylogenetic Analysis

    • José Ignacio Requeno, Roberto Blanco, Gregorio de Miguel Casado, José Manuel Colom
    Pages 95-103
  10. PHYSER: An Algorithm to Detect Sequencing Errors from Phylogenetic Information

    • Jorge Álvarez-Jarreta, Elvira Mayordomo, Eduardo Ruiz-Pesini
    Pages 105-112
  11. A Systematic Approach to the Interrogation and Sharing of Standardised Biofilm Signatures

    • Anália Lourenço, Andreia Ferreira, Maria Olivia Pereira, Nuno F. Azevedo
    Pages 113-120
  12. Visual Analysis Tool in Comparative Genomics

    • Juan F. De Paz, Carolina Zato, María Abáigar, Ana Rodríguez-Vicente, Rocío Benito, Jesús M. Hernández
    Pages 121-127
  13. From Networks to Trees

    • Marco Alves, Joãd Alves, Rui Camacho, Pedro Soares, Luísa Pereira
    Pages 129-136
  14. Procedure for Detection of Membranes in Three-Dimensional Subcellular Density Maps

    • A. Martinez-Sanchez, I. Garcia, J. J. Fernandez
    Pages 137-145
  15. A Cellular Automaton Model for Tumor Growth Simulation

    • Ángel Monteagudo, José Santos
    Pages 147-155
  16. Ectopic Foci Study on the Crest Terminalis in 3D Computer Model of Human Atrial

    • Carlos A. Ruiz-Villa, Andrés P. Castaño, Andrés Castillo, Elvio Heidenreich
    Pages 157-164
  17. SAD_BaSe: A Blood Bank Data Analysis Software

    • Augusto Ramoa, Salomé Maia, Anália Lourenço
    Pages 165-171

About this book

The growth in the Bioinformatics and Computational Biology fields over the last few years has been remarkable and the trend is to increase its pace. In fact, the need for computational techniques that can efficiently handle the huge amounts of data produced by the new experimental techniques in Biology is still increasing driven by new advances in Next Generation Sequencing, several types of the so called omics data and image acquisition, just to name a few. The analysis of the datasets that produces and its integration call for new algorithms and approaches from fields such as Databases, Statistics, Data Mining, Machine Learning, Optimization, Computer Science and Artificial Intelligence. Within this scenario of increasing data availability, Systems Biology has also been emerging as an alternative to the reductionist view that dominated biological research in the last decades. Indeed, Biology is more and more a science of information requiring tools from the computational sciences. In the last few years, we have seen the surge of a new generation of interdisciplinary scientists that have a strong background in the biological and computational sciences. In this context, the interaction of researchers from different scientific fields is, more than ever, of foremost importance boosting the research efforts in the field and contributing to the education of a new generation of Bioinformatics scientists. PACBB‘12 hopes to contribute to this effort promoting this fruitful interaction. PACBB'12 technical program included 32 papers from a submission pool of 61 papers spanning many different sub-fields in Bioinformatics and Computational Biology. Therefore, the conference will certainly have promoted the interaction of scientists from diverse research groups and with a distinct background (computer scientists, mathematicians, biologists). The scientific content will certainly be challenging andwill promote the improvement of the work that is being developed by each of the participants.

Editors and Affiliations

  • , Dep. Informática / CCTC, Universidade do Minho, Braga, Portugal

    Miguel P. Rocha

  • European Bioinformatics Institute, Wellcome Trust Genome Campus, EMBL Outstation - Hinxton, Hinxton, United Kingdom

    Nicholas Luscombe

  • , Department of Informatics, University of Vigo, Ourense, Spain

    Florentino Fdez-Riverola

  • Faculty of Science, Department of Computing Science, University of Salamanca, Salamanca, Spain

    Juan M. Corchado Rodríguez

Bibliographic Information

Buy it now

Buying options

eBook USD 129.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access