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Advances in Bioinformatics and Computational Biology

6th Brazilian Symposium on Bioinformatics, BSB 2011, Brasília, Brazil, August 10-12, 2011, Proceedings

  • Conference proceedings
  • © 2011

Overview

Editors:
  1. Osmar Norberto de Souza

    1. Faculdade de Informática - PUCRS, Avenida Ipiranga, Porto, Brazil

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  2. Guilherme P. Telles

    1. Instituto de Computação - Unicamp, Avenida, Campinas-SP, Brazil

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  3. Mathew Palakal

    1. Indiana University Purdue University Indianapolis, Indianapolis, USA

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 6832)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: BSB 2011.

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Table of contents (12 papers)

  1. Front Matter

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  2. Full Papers

    1. MicroRNA or Not MicroRNA?

      • David Langenberger, Sebastian Bartschat, Jana Hertel, Steve Hoffmann, Hakim Tafer, Peter F. Stadler
      Pages 1-9

    2. Hierarchical Multilabel Protein Function Prediction Using Local Neural Networks

      • Ricardo Cerri, André C. P. L. F. de Carvalho
      Pages 10-17

    3. Identifying Significant Features in HIV Sequence to Predict Patients’ Response to Therapies

      • Samuel Evangelista de Lima Oliveira, Luiz Henrique de Campos Merschmann, Leoneide Erica Maduro Bouillet
      Pages 18-25

    4. Gene Prediction by Multiple Spliced Alignment

      • Rodrigo Mitsuo Kishi, Ronaldo Fiorilo dos Santos, Said Sadique Adi
      Pages 26-33

    5. A New Algorithm for Sparse Suffix Trees

      • Gustavo Akio T. Sacomoto, Alair Pereira do Lago
      Pages 34-41

    6. Analysis and Implementation of Sorting by Transpositions Using Permutation Trees

      • Marcelo P. Lopes, Marilia D. V. Braga, Celina M. H. de Figueiredo, Rodrigo de A. Hausen, Luis Antonio B. Kowada
      Pages 42-49

    7. Improved Gene Expression Clustering with the Parameter-Free PKNNG Metric

      • Ariel E. Bayá, Pablo M. Granitto
      Pages 50-57

    8. Efficiently Querying Protein Sequences with the Proteinus Index

      • Felipe Alves da Louza, Ricardo Rodrigues Ciferri, Cristina Dutra de Aguiar Ciferri
      Pages 58-65

  3. Extended Abstracts

    1. SciPhy: A Cloud-Based Workflow for Phylogenetic Analysis of Drug Targets in Protozoan Genomes

      • Kary A. C. S. Ocaña, Daniel de Oliveira, Eduardo Ogasawara, Alberto M. R. Dávila, Alexandre A. B. Lima, Marta Mattoso
      Pages 66-70

    2. A Conceptual Model for Transcriptome High-Throughput Sequencing Pipeline

      • Ruben Cruz Huacarpuma, Maristela Holanda, Maria Emilia Walter
      Pages 71-74

    3. A Conceptual Many Tasks Computing Architecture to Execute Molecular Docking Simulations of a Fully-Flexible Receptor Model

      • Renata De Paris, Fábio A. Frantz, Osmar Norberto de Souza, Duncan D. Ruiz
      Pages 75-78

    4. kGC: Finding Groups of Homologous Genes across Multiple Genomes

      • Guilherme P. Telles, Nalvo F. Almeida, Marcelo M. Brigido, Paulo Antonio Alvarez, Maria Emilia Walter
      Pages 79-82

  4. Back Matter

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Other volumes

  1. Advances in Bioinformatics and Computational Biology

Keywords

About this book

This book constitutes the proceedings of the 6th Brazilian Symposium on Bioinformatics, BSB 2011, held in Brasília, Brazil, in August 2011. The 8 full papers and 4 extended abstracts presented were carefully peer-reviewed and selected for inclusion in this book. The BSB topics of interest cover many areas of bioinformatics that range from theoretical aspects of problems in bioinformatics to applications in molecular biology, biochemistry, genetics, and associated subjects.

Editors and Affiliations

  • Faculdade de Informática - PUCRS, Avenida Ipiranga, Porto, Brazil

    Osmar Norberto de Souza

  • Instituto de Computação - Unicamp, Avenida, Campinas-SP, Brazil

    Guilherme P. Telles

  • Indiana University Purdue University Indianapolis, Indianapolis, USA

    Mathew Palakal

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