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Computational Intelligence Methods for Bioinformatics and Biostatistics

6th International Meeting, CIBB 2009, Genoa, Italy, October 15-17, 2009, Revised Selected Papers

  • Conference proceedings
  • © 2010

Overview

Editors:
  1. Francesco Masulli

    1. DISI - Dipartimento di Informatica e Scienze dell’Informazione, Università di Genova, Genova, Italy

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  2. Leif E. Peterson

    1. Center for Biostatistics, The Methodist Hospital Research Institute (TMHRI), Weill Cornell Medical College, Cornell University, Houston, USA

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  3. Roberto Tagliaferri

    1. Dipartimento di Matematica ed Informatica, Università di Salerno, Fisciano, Italy

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 6160)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

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Conference proceedings info: CIBB 2009.

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Table of contents (23 papers)

  1. Front Matter

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  2. Tools for Bioinformatics

    1. The ImmunoGrid Simulator: How to Use It

      • Francesco Pappalardo, Mark Halling-Brown, Marzio Pennisi, Ferdinando Chiacchio, Clare E. Sansom, Adrian J. Shepherd et al.
      Pages 1-19

    2. Improving Coiled-Coil Prediction with Evolutionary Information

      • Piero Fariselli, Lisa Bartoli, Rita Casadio
      Pages 20-32

    3. Intelligent Text Processing Techniques for Textual-Profile Gene Characterization

      • Floriana Esposito, Marenglen Biba, Stefano Ferilli
      Pages 33-44

    4. SILACAnalyzer - A Tool for Differential Quantitation of Stable Isotope Derived Data

      • Lars Nilse, Marc Sturm, David Trudgian, Mogjiborahman Salek, Paul F. G. Sims, Kathleen M. Carroll et al.
      Pages 45-55

  3. Gene Expression Analysis

    1. Non-parametric MANOVA Methods for Detecting Differentially Expressed Genes in Real-Time RT-PCR Experiments

      • Niccoló Bassani, Federico Ambrogi, Roberta Bosotti, Matteo Bertolotti, Antonella Isacchi, Elia Biganzoli
      Pages 56-69

    2. In Silico Screening for Pathogenesis Related-2 Gene Candidates in Vigna Unguiculata Transcriptome

      • Ana Carolina Wanderley-Nogueira, Nina da Mota Soares-Cavalcanti, Luis Carlos Belarmino, Adriano Barbosa-Silva, Ederson Akio Kido, Semiramis Jamil Hadad do Monte et al.
      Pages 70-81

    3. Penalized Principal Component Analysis of Microarray Data

      • Vladimir Nikulin, Geoffrey J. McLachlan
      Pages 82-96

    4. An Information Theoretic Approach to Reverse Engineering of Regulatory Gene Networks from Time–Course Data

      • Pietro Zoppoli, Sandro Morganella, Michele Ceccarelli
      Pages 97-111

  5. Special Session on “Using Game-Theoretical Tools in Bioinformatics”

    1. Basics of Game Theory for Bioinformatics

      • Fioravante Patrone
      Pages 165-178

    2. Microarray Data Analysis via Weighted Indices and Weighted Majority Games

      • Roberto Lucchetti, Paola Radrizzani
      Pages 179-190

  6. Special Session on “Combining Bayesian and Machine Learning Approaches in Bioinformatics: State of Art and Future Perspectives”

    1. Combining Replicates and Nearby Species Data: A Bayesian Approach

      • Claudia Angelini, Italia De Feis, Viet Anh Nguyen, Richard van der Wath, Pietro Liò
      Pages 191-205

    2. Multiple Sequence Alignment with Genetic Algorithms

      • Marco Botta, Guido Negro
      Pages 206-214

  7. Special Session on “Data Clustering and Bioinformatics” (DCB 2009)

    1. Multiple Clustering Solutions Analysis through Least-Squares Consensus Algorithms

      • Loredana Murino, Claudia Angelini, Ida Bifulco, Italia De Feis, Giancarlo Raiconi, Roberto Tagliaferri
      Pages 215-227

    2. Projection Based Clustering of Gene Expression Data

      • Sotiris K. Tasoulis, Vassilis P. Plagianakos, Dimitris K. Tasoulis
      Pages 228-239

    3. Searching a Multivariate Partition Space Using MAX-SAT

      • Silvia Liverani, James Cussens, Jim Q. Smith
      Pages 240-253

    4. A Novel Approach for Biclustering Gene Expression Data Using Modular Singular Value Decomposition

      • V. N. Manjunath Aradhya, Francesco Masulli, Stefano Rovetta
      Pages 254-265
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  1. Computational Intelligence Methods for Bioinformatics and Biostatistics

Keywords

Editors and Affiliations

  • DISI - Dipartimento di Informatica e Scienze dell’Informazione, Università di Genova, Genova, Italy

    Francesco Masulli

  • Center for Biostatistics, The Methodist Hospital Research Institute (TMHRI), Weill Cornell Medical College, Cornell University, Houston, USA

    Leif E. Peterson

  • Dipartimento di Matematica ed Informatica, Università di Salerno, Fisciano, Italy

    Roberto Tagliaferri

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