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Research in Computational Molecular Biology

10th Annual International Conference, RECOMB 2006, Venice, Italy, April 2-5, 2006, Proceedings

  • Conference proceedings
  • © 2006

Overview

Editors:
  1. Alberto Apostolico

    1. Georgia Institute of Technology and Università di Padova,  

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  2. Concettina Guerra

    1. Topic Chairs

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  3. Sorin Istrail

    1. Center for Molecular Biology and Computer Sciecne Department, Brown University, Providence, USA

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  4. Pavel A. Pevzner

    1. University of California, San Diego, USA

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  5. Michael Waterman

    1. Department of Molecular and Computational Biology, University of Southern California, Los Angeles, USA

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 3909)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: RECOMB 2006.

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Table of contents (49 papers)

  1. Front Matter

    Download chapter PDF

  2. Integrated Protein Interaction Networks for 11 Microbes

    • Balaji S. Srinivasan, Antal F. Novak, Jason A. Flannick, Serafim Batzoglou, Harley H. McAdams
    Pages 1-14

  3. Hypergraph Model of Multi-residue Interactions in Proteins: Sequentially–Constrained Partitioning Algorithms for Optimization of Site-Directed Protein Recombination

    • Xiaoduan Ye, Alan M. Friedman, Chris Bailey-Kellogg
    Pages 15-29

  4. Biological Networks: Comparison, Conservation, and Evolutionary Trees

    • Benny Chor, Tamir Tuller
    Pages 30-44

  5. Assessing Significance of Connectivity and Conservation in Protein Interaction Networks

    • Mehmet Koyutürk, Ananth Grama, Wojciech Szpankowski
    Pages 45-59

  6. Clustering Short Gene Expression Profiles

    • Ling Wang, Marco Ramoni, Paola Sebastiani
    Pages 60-68

  7. A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies

    • Naftali Kaminski, Ziv Bar-Joseph
    Pages 69-82

  8. Global Interaction Networks Probed by Mass Spectrometry

    • Anne-Claude Gavin
    Pages 83-83

  9. Statistical Evaluation of Genome Rearrangement

    • David Sankoff
    Pages 84-84

  10. An Improved Statistic for Detecting Over-Represented Gene Ontology Annotations in Gene Sets

    • Steffen Grossmann, Sebastian Bauer, Peter N. Robinson, Martin Vingron
    Pages 85-98

  11. Protein Function Annotation Based on Ortholog Clusters Extracted from Incomplete Genomes Using Combinatorial Optimization

    • Akshay Vashist, Casimir Kulikowski, Ilya Muchnik
    Pages 99-113

  12. Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data

    • Jim C. Huang, Quaid D. Morris, Brendan J. Frey
    Pages 114-129

  13. RNA Secondary Structure Prediction Via Energy Density Minimization

    • Can Alkan, Emre Karakoc, S. Cenk Sahinalp, Peter Unrau, H. Alexander Ebhardt, Kaizhong Zhang et al.
    Pages 130-142

  14. Structural Alignment of Pseudoknotted RNA

    • Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna
    Pages 143-158

  15. Stan Ulam and Computational Biology

    • Michael S. Waterman
    Pages 159-159

  16. CONTRAlign: Discriminative Training for Protein Sequence Alignment

    • Chuong B. Do, Samuel S. Gross, Serafim Batzoglou
    Pages 160-174

  17. Clustering Near-Identical Sequences for Fast Homology Search

    • Michael Cameron, Yaniv Bernstein, Hugh E. Williams
    Pages 175-189

  18. New Methods for Detecting Lineage-Specific Selection

    • Adam Siepel, Katherine S. Pollard, David Haussler
    Pages 190-205

  19. A Probabilistic Model for Gene Content Evolution with Duplication, Loss, and Horizontal Transfer

    • Miklós Csűrös, István Miklós
    Pages 206-220

  20. A Sublinear-Time Randomized Approximation Scheme for the Robinson-Foulds Metric

    • Nicholas D. Pattengale, Bernard M. E. Moret
    Pages 221-230
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Other volumes

  1. Research in Computational Molecular Biology

Keywords

Editors and Affiliations

  • Georgia Institute of Technology and Università di Padova,  

    Alberto Apostolico

  • Topic Chairs

    Concettina Guerra

  • Center for Molecular Biology and Computer Sciecne Department, Brown University, Providence, USA

    Sorin Istrail

  • University of California, San Diego, USA

    Pavel A. Pevzner

  • Department of Molecular and Computational Biology, University of Southern California, Los Angeles, USA

    Michael Waterman

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