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Computational Intelligence Methods for Bioinformatics and Biostatistics

13th International Meeting, CIBB 2016, Stirling, UK, September 1-3, 2016, Revised Selected Papers

  • Conference proceedings
  • © 2017

Overview

Editors:
  1. Andrea Bracciali

    1. Computing Science and Mathematics, University of Stirling, Stirling, United Kingdom

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  2. Giulio Caravagna

    1. School of Informatics, University of Edinburgh, Edinburgh, United Kingdom

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  3. David Gilbert

    1. Department of Computer Science, Brunel University London, Uxbridge, United Kingdom

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  4. Roberto Tagliaferri

    1. Department of Management and Innovation Systems DISA-MIS, University of Salerno, Fisciano, Italy

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 10477)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: CIBB 2016.

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Table of contents (19 papers)

  1. Front Matter

    Pages I-XXII
    Download chapter PDF

  2. Module Detection Based on Significant Shortest Paths for the Characterization of Gene Expression Data

    • Daniele Pepe
    Pages 1-11

  3. Information-Theoretic Active Contour Model for Microscopy Image Segmentation Using Texture

    • Veronica Biga, Daniel Coca
    Pages 12-26

  4. Host Phenotype Prediction from Differentially Abundant Microbes Using RoDEO

    • Anna Paola Carrieri, Niina Haiminen, Laxmi Parida
    Pages 27-41

  5. DeepScope: Nonintrusive Whole Slide Saliency Annotation and Prediction from Pathologists at the Microscope

    • Andrew J. Schaumberg, S. Joseph Sirintrapun, Hikmat A. Al-Ahmadie, Peter J. Schüffler, Thomas J. Fuchs
    Pages 42-58

  6. PLS-SEM Mediation Analysis of Gene-Expression Data for the Evaluation of a Drug Effect

    • Daniele Pepe, Tomasz Burzykowski
    Pages 59-69

  7. A Novel Algorithm for CpG Island Detection in Human Genome Based on Clustering and Chaotic Particle Swarm Optimization

    • Abdelbasset Boukelia, Zakaria Benmounah, Mohamed Batouche, Bouchera Maati, Ikram Nekkache
    Pages 70-81

  8. COSYS: A Computational Infrastructure for Systems Biology

    • Fabio Cumbo, Marco S. Nobile, Chiara Damiani, Riccardo Colombo, Giancarlo Mauri, Paolo Cazzaniga
    Pages 82-92

  9. Statistical Texture-Based Mapping of Cell Differentiation Under Microfluidic Flow

    • Veronica Biga, Olívia M. Alves Coelho, Paul J. Gokhale, James E. Mason, Eduardo M. A. M. Mendes, Peter W. Andrews et al.
    Pages 93-106

  10. Constraining Mechanism Based Simulations to Identify Ensembles of Parametrizations to Characterize Metabolic Features

    • Riccardo Colombo, Chiara Damiani, Giancarlo Mauri, Dario Pescini
    Pages 107-117

  11. Process Algebra with Layers: Multi-scale Integration Modelling Applied to Cancer Therapy

    • Erin Scott, James Nicol, Jonathan Coulter, Andrew Hoyle, Carron Shankland
    Pages 118-133

  12. A Problem-Driven Approach for Building a Bioinformatics GraphDB

    • Antonino Fiannaca, Massimo La Rosa, Laura La Paglia, Antonio Messina, Riccardo Rizzo, Alfonso Urso
    Pages 134-144

  13. Parameter Inference in Differential Equation Models of Biopathways Using Time Warped Gradient Matching

    • Mu Niu, Simon Rogers, Maurizio Filippone, Dirk Husmeier
    Pages 145-159

  14. IRIS-TCGA: An Information Retrieval and Integration System for Genomic Data of Cancer

    • Fabio Cumbo, Emanuel Weitschek, Paola Bertolazzi, Giovanni Felici
    Pages 160-171

  15. Effect of UV Radiation on DPPG and DMPC Liposomes in Presence of Catechin Molecules

    • Filipa Pires, Gonçalo Magalhães-Mota, Paulo António Ribeiro, Maria Raposo
    Pages 172-183

  16. Inference in a Partial Differential Equations Model of Pulmonary Arterial and Venous Blood Circulation Using Statistical Emulation

    • Umberto Noè, Weiwei Chen, Maurizio Filippone, Nicholas Hill, Dirk Husmeier
    Pages 184-198

  17. Ensemble Approaches for Stable Assessment of Clusters in Microbiome Samples

    • Sanja Brdar, Vladimir Crnojević
    Pages 199-208

  18. Multilayer Data and Document Stratification for Comorbidity Analysis

    • Kevin Heffernan, Pietro Liò, Simone Teufel
    Pages 209-219

  19. Evolving Dendritic Morphologies Highlight the Impact of Structured Synaptic Inputs on Neuronal Performance

    • Mohammad Ziyad Kagdi
    Pages 220-234

  20. Semantic Clustering for Identifying Overlapping Biological Communities

    • Hassan Mahmoud, Francesco Masulli, Stefano Rovetta
    Pages 235-247
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Other volumes

  1. Computational Intelligence Methods for Bioinformatics and Biostatistics

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About this book

This book constitutes the thoroughly refereed post-conference proceedings of the 13th International Meeting on Computational Intelligence Methods  for Bioinformatics and Biostatistics, CIBB 2016, held in Stirling, UK, in September 2016. The 19 revised full papers and 6 keynotes abstracts presented were carefully reviewed and selected from 61 submissions. The papers  deal with the application of computational intelligence to open problems in bioinformatics, biostatistics, systems and synthetic biology, medicalinformatics, computational approaches to life sciences in general

Editors and Affiliations

  • Computing Science and Mathematics, University of Stirling, Stirling, United Kingdom

    Andrea Bracciali

  • School of Informatics, University of Edinburgh, Edinburgh, United Kingdom

    Giulio Caravagna

  • Department of Computer Science, Brunel University London, Uxbridge, United Kingdom

    David Gilbert

  • Department of Management and Innovation Systems DISA-MIS, University of Salerno, Fisciano, Italy

    Roberto Tagliaferri

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