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Algorithms for Computational Biology

Third International Conference, AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings

  • Conference proceedings
  • © 2016

Overview

Editors:
  1. María Botón-Fernández

    1. CETA-Ciemat, Trujillo, Spain

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  2. Carlos Martín-Vide

    1. Rovira i Virgili University, Tarragona, Spain

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  3. Sergio Santander-Jiménez

    1. University of Extremadura, Cáceres, Spain

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  4. Miguel A. Vega-Rodríguez

    1. University of Extremadura, Cáceres, Spain

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 9702)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: AlCoB 2016.

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Table of contents (14 papers)

  1. Front Matter

    Pages I-X
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  2. Invited Talk

    1. Front Matter

      Pages 1-1
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    2. The Trees in the Peaks

      • David Sankoff, Chunfang Zheng, Eric Lyons, Haibao Tang
      Pages 3-14

  3. Biological Networks and Modelling

    1. Front Matter

      Pages 15-15
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    2. Relating Bisimulations with Attractors in Boolean Network Models

      • Daniel Figueiredo
      Pages 17-25

    3. Neural Networks Simulation of Feeding Adaptations of Daphnia

      • Tibor Kmet, Maria Kmetova
      Pages 26-37

    4. Generating the Logicome of a Biological Network

      • Charmi Panchal, Sepinoud Azimi, Ion Petre
      Pages 38-49

  4. Biological Structure Processing

    1. Front Matter

      Pages 51-51
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    2. Counting, Generating and Sampling Tree Alignments

      • Cedric Chauve, Julien Courtiel, Yann Ponty
      Pages 53-64

    3. A New Multi-objective Approach for Molecular Docking Based on RMSD and Binding Energy

      • Esteban López-Camacho, María Jesús García-Godoy, José García-Nieto, Antonio J. Nebro, José F. Aldana-Montes
      Pages 65-77

    4. Gibbs/MCMC Sampling for Multiple RNA Interaction with Sub-optimal Solutions

      • Saad Mneimneh, Syed Ali Ahmed
      Pages 78-90

  5. Phylogenetics

    1. Front Matter

      Pages 91-91
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    2. Accumulated Coalescence Rank and Excess Gene Count for Species Tree Inference

      • Sourya Bhattacharyya, Jayanta Mukhopadhyay
      Pages 93-105

    3. Bootstrapping Algorithms for Gene Duplication and Speciation Events

      • Agnieszka Mykowiecka, Pawel Górecki
      Pages 106-118

    4. Robustness of the Parsimonious Reconciliation Method in Cophylogeny

      • Laura Urbini, Blerina Sinaimeri, Catherine Matias, Marie-France Sagot
      Pages 119-130

  6. Sequence Analysis and Rearrangement

    1. Front Matter

      Pages 131-131
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    2. Sorting with Forbidden Intermediates

      • Carlo Comin, Anthony Labarre, Romeo Rizzi, Stéphane Vialette
      Pages 133-144

    3. Evaluation and Improvement of Fast Algorithms for Exact Matching on Genome Sequences

      • Simone Faro
      Pages 145-157

    4. Identification of Variant Compositions in Related Strains Without Reference

      • Mikko Rautiainen, Leena Salmela, Veli Mäkinen
      Pages 158-170

    5. New Error Tolerant Method for Search of Long Repeats in DNA Sequences

      • Sergey P. Tsarev, Michael G. Sadovsky
      Pages 171-182
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Other volumes

  1. Algorithms for Computational Biology

Keywords

About this book

This book constitutes the proceedings of the Third International
Conference on Algorithms for Computational Biology, AlCoB 2016, held in
Trujillo, Spain, in June 2016.


The 13 full papers presented in this volume were carefully reviewed and
selected from 23 submissions. They are organized in the following topical sections: biological networks and modelling; biological structure processing; phylogenetics; and sequence analysis and rearrangement. In addition one invited talk is included.

Editors and Affiliations

  • CETA-Ciemat, Trujillo, Spain

    María Botón-Fernández

  • Rovira i Virgili University, Tarragona, Spain

    Carlos Martín-Vide

  • University of Extremadura, Cáceres, Spain

    Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez

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