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Bioinformatics Research and Applications

12th International Symposium, ISBRA 2016, Minsk, Belarus, June 5-8, 2016, Proceedings

  • Conference proceedings
  • © 2016

Overview

Editors:
  1. Anu Bourgeois

    1. Dept. of Computer Science, Georgia State University, Atlanta, USA

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  2. Pavel Skums

    1. Centre for Disease Control & Prevention, Atlanta, USA

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  3. Xiang Wan

    1. Department of Computer Science, Hong Kong Baptist University, Kowloon Tong, Hong Kong

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    You can also search for this editor in PubMed   Google Scholar

  4. Alex Zelikovsky

    1. Georgia State University, Atlanta, USA

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 9683)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: ISBRA 2016.

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Table of contents (24 papers)

  1. Front Matter

    Pages I-XV
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  2. Next Generation Sequencing Data Analysis

    1. Front Matter

      Pages 1-1
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    2. An Efficient Algorithm for Finding All Pairs k-Mismatch Maximal Common Substrings

      • Sharma V. Thankachan, Sriram P. Chockalingam, Srinivas Aluru
      Pages 3-14

    3. Poisson-Markov Mixture Model and Parallel Algorithm for Binning Massive and Heterogenous DNA Sequencing Reads

      • Lu Wang, Dongxiao Zhu, Yan Li, Ming Dong
      Pages 15-26

    4. FSG: Fast String Graph Construction for De Novo Assembly of Reads Data

      • Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi
      Pages 27-39

    5. OVarCall: Bayesian Mutation Calling Method Utilizing Overlapping Paired-End Reads

      • Takuya Moriyama, Yuichi Shiraishi, Kenichi Chiba, Rui Yamaguchi, Seiya Imoto, Satoru Miyano
      Pages 40-51

    6. High-Performance Sensing of DNA Hybridization on Surface of Self-organized MWCNT-Arrays Decorated by Organometallic Complexes

      • V. P. Egorova, H. V. Grushevskaya, N. G. Krylova, I. V. Lipnevich, T. I. Orekhovskaja, B. G. Shulitski et al.
      Pages 52-66

    7. Towards a More Accurate Error Model for BioNano Optical Maps

      • Menglu Li, Angel C. Y. Mak, Ernest T. Lam, Pui-Yan Kwok, Ming Xiao, Kevin Y. Yip et al.
      Pages 67-79

    8. HapIso: An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads

      • Serghei Mangul, Harry (Taegyun) Yang, Farhad Hormozdiari, Elizabeth Tseng, Alex Zelikovsky, Eleazar Eskin
      Pages 80-92

  3. Protein-Protein Interactions and Networks

    1. Front Matter

      Pages 93-93
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    2. Genome-Wide Structural Modeling of Protein-Protein Interactions

      • Ivan Anishchenko, Varsha Badal, Taras Dauzhenka, Madhurima Das, Alexander V. Tuzikov, Petras J. Kundrotas et al.
      Pages 95-105

    3. Identifying Essential Proteins by Purifying Protein Interaction Networks

      • Min Li, Xiaopei Chen, Peng Ni, Jianxin Wang, Yi Pan
      Pages 106-116

    4. Differential Functional Analysis and Change Motifs in Gene Networks to Explore the Role of Anti-sense Transcription

      • Marc Legeay, Béatrice Duval, Jean-Pierre Renou
      Pages 117-126

    5. Predicting MicroRNA-Disease Associations by Random Walking on Multiple Networks

      • Wei Peng, Wei Lan, Zeng Yu, Jianxin Wang, Yi Pan
      Pages 127-135

    6. Progression Reconstruction from Unsynchronized Biological Data using Cluster Spanning Trees

      • Ryan Eshleman, Rahul Singh
      Pages 136-147

  4. Protein and RNA Structure

    1. Front Matter

      Pages 149-149
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    2. Consistent Visualization of Multiple Rigid Domain Decompositions of Proteins

      • Emily Flynn, Ileana Streinu
      Pages 151-162

    3. A Multiagent Ab Initio Protein Structure Prediction Tool for Novices and Experts

      • Thiago Lipinski-Paes, Michele dos Santos da Silva Tanus, José Fernando Ruggiero Bachega, Osmar Norberto de Souza
      Pages 163-174

    4. Filling a Protein Scaffold with a Reference

      • Letu Qingge, Xiaowen Liu, Farong Zhong, Binhai Zhu
      Pages 175-186

  5. Phylogenetics

    1. Front Matter

      Pages 187-187
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Other volumes

  1. Bioinformatics Research and Applications

Keywords

About this book

This book constitutes the proceedings of the 12th International Symposium on Bioinformatics Research and Applications, ISBRA 2016, held in Minsk, Belarus, in June 2016.
The 25 papers presented in this volume were carefully reviewed and selected from 77 submissions. They were organized in topical sections named: next generation sequencing data analysis; protein-protein interactions and networks; protein and RNA structure; phylogenetics; sequence analysis; and statistical methods.

Editors and Affiliations

  • Dept. of Computer Science, Georgia State University, Atlanta, USA

    Anu Bourgeois

  • Centre for Disease Control & Prevention, Atlanta, USA

    Pavel Skums

  • Department of Computer Science, Hong Kong Baptist University, Kowloon Tong, Hong Kong

    Xiang Wan

  • Georgia State University, Atlanta, USA

    Alex Zelikovsky

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