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Algorithms for Computational Biology

Second International Conference, AlCoB 2015, Mexico City, Mexico, August 4-5, 2015, Proceedings

  • Conference proceedings
  • © 2015

Overview

Editors:
  1. Adrian-Horia Dediu

    1. Research Group on Mathematical Linguistics, Rovira i Virgili University, Tarragona, Spain

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  2. Francisco Hernández-Quiroz

    1. Faculty of Science, National Autonomous University of Mexico - UNAM, Mexico City, Mexico

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  3. Carlos Martín-Vide

    1. Research Group on Mathematical Linguistics, Rovira i Virgili University, Tarragona, Spain

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  4. David A. Rosenblueth

    1. Institute for Research in Applied Mathematics and Systems – IIMAS, National Autonomous University of Mexico - UNAM, Mexico City, Mexico

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 9199)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: AlCoB 2015.

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Table of contents (11 papers)

  1. Front Matter

    Pages I-X
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  2. Genetic Processing

    1. Front Matter

      Pages 1-1
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    2. Generalized Hultman Numbers and the Distribution of Multi-break Distances

      • Nikita Alexeev, Anna Pologova, Max A. Alekseyev
      Pages 3-12

    3. Implicit Transpositions in Shortest DCJ Scenarios

      • Shuai Jiang, Max A. Alekseyev
      Pages 13-24

    4. Constraint-Based Genetic Compilation

      • Christophe Ladroue, Sara Kalvala
      Pages 25-38

  3. Molecular Recognition/Prediction

    1. Front Matter

      Pages 39-39
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    2. P2RANK: Knowledge-Based Ligand Binding Site Prediction Using Aggregated Local Features

      • Radoslav Krivák, David Hoksza
      Pages 41-52

    3. StreaM - A Stream-Based Algorithm for Counting Motifs in Dynamic Graphs

      • Benjamin Schiller, Sven Jager, Kay Hamacher, Thorsten Strufe
      Pages 53-67

    4. Convolutional LSTM Networks for Subcellular Localization of Proteins

      • Søren Kaae Sønderby, Casper Kaae Sønderby, Henrik Nielsen, Ole Winther
      Pages 68-80

  4. Phylogenetics

    1. Front Matter

      Pages 81-81
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    2. Hybrid Genetic Algorithm and Lasso Test Approach for Inferring Well Supported Phylogenetic Trees Based on Subsets of Chloroplastic Core Genes

      • Bassam AlKindy, Christophe Guyeux, Jean-François Couchot, Michel Salomon, Christian Parisod, Jacques M. Bahi
      Pages 83-96

    3. Constructing and Employing Tree Alignment Graphs for Phylogenetic Synthesis

      • Ruchi Chaudhary, David Fernández-Baca, J. Gordon Burleigh
      Pages 97-108

    4. A More Practical Algorithm for the Rooted Triplet Distance

      • Jesper Jansson, Ramesh Rajaby
      Pages 109-125

    5. Likelihood-Based Inference of Phylogenetic Networks from Sequence Data by PhyloDAG

      • Quan Nguyen, Teemu Roos
      Pages 126-140

    6. Constructing Parsimonious Hybridization Networks from Multiple Phylogenetic Trees Using a SAT-Solver

      • Vladimir Ulyantsev, Mikhail Melnik
      Pages 141-153

  5. Back Matter

    Pages 155-155
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Other volumes

  1. Algorithms for Computational Biology

Keywords

About this book

This book constitutes the proceedings of the Second International Conference on Algorithms for Computational Biology, AICoB 2015, held in Mexico City, Mexico, in August 2015.

The 11 papers presented in this volume were carefully reviewed and selected from 23 submissions. They were organized in topical sections named: genetic processing; molecular recognition/prediction; and phylogenetics.                                      

Reviews

                                                              

Editors and Affiliations

  • Research Group on Mathematical Linguistics, Rovira i Virgili University, Tarragona, Spain

    Adrian-Horia Dediu, Carlos Martín-Vide

  • Faculty of Science, National Autonomous University of Mexico - UNAM, Mexico City, Mexico

    Francisco Hernández-Quiroz

  • Institute for Research in Applied Mathematics and Systems – IIMAS, National Autonomous University of Mexico - UNAM, Mexico City, Mexico

    David A. Rosenblueth

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