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Research in Computational Molecular Biology

19th Annual International Conference, RECOMB 2015, Warsaw, Poland, April 12-15, 2015, Proceedings

  • Conference proceedings
  • © 2015

Overview

Editors:
  1. Teresa M. Przytycka

    1. National Center of Biotechnology Information, Bethesda, USA

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 9029)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: RECOMB 2015.

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Table of contents (36 papers)

  1. Front Matter

    Pages I-XVII
    Download chapter PDF

  2. Efficient Alignment Free Sequence Comparison with Bounded Mismatches

    • Srinivas Aluru, Alberto Apostolico, Sharma V. Thankachan
    Pages 1-12

  3. DockStar: A Novel ILP Based Integrative Method for Structural Modelling of Multimolecular Protein Complexes (Extended Abstract)

    • Naama Amir, Dan Cohen, Haim J. Wolfson
    Pages 13-15

  4. CRISPR Detection from Short Reads Using Partial Overlap Graphs

    • Ilan Ben-Bassat, Benny Chor
    Pages 16-27

  5. HapTree-X: An Integrative Bayesian Framework for Haplotype Reconstruction from Transcriptome and Genome Sequencing Data

    • Emily Berger, Deniz Yorukoglu, Bonnie Berger
    Pages 28-29

  6. Read Clouds Uncover Variation in Complex Regions of the Human Genome

    • Alex Bishara, Yuling Liu, Dorna Kashef-Haghighi, Ziming Weng, Daniel E. Newburger, Robert West et al.
    Pages 30-31

  7. Learning Microbial Interaction Networks from Metagenomic Count Data

    • Surojit Biswas, Meredith McDonald, Derek S. Lundberg, Jeffery L. Dangl, Vladimir Jojic
    Pages 32-43

  8. Immunoglobulin Classification Using the Colored Antibody Graph

    • Stefano R. Bonissone, Pavel A. Pevzner
    Pages 44-59

  9. CIDANE: Comprehensive Isoform Discovery and Abundance Estimation

    • Stefan Canzar, Sandro Andreotti, David Weese, Knut Reinert, Gunnar W. Klau
    Pages 60-61

  10. Diffusion Component Analysis: Unraveling Functional Topology in Biological Networks

    • Hyunghoon Cho, Bonnie Berger, Jian Peng
    Pages 62-64

  11. Fragmentation Trees Reloaded

    • Kai Dührkop, Sebastian Böcker
    Pages 65-79

  12. KGSrna: Efficient 3D Kinematics-Based Sampling for Nucleic Acids

    • Rasmus Fonseca, Henry van den Bedem, Julie Bernauer
    Pages 80-95

  13. Locating a Tree in a Phylogenetic Network in Quadratic Time

    • Philippe Gambette, Andreas D. M. Gunawan, Anthony Labarre, Stéphane Vialette, Louxin Zhang
    Pages 96-107

  14. Constructing Structure Ensembles of Intrinsically Disordered Proteins from Chemical Shift Data

    • Huichao Gong, Sai Zhang, Jiangdian Wang, Haipeng Gong, Jianyang Zeng
    Pages 108-121

  15. Comets (Constrained Optimization of Multistate Energies by Tree Search): A Provable and Efficient Algorithm to Optimize Binding Affinity and Specificity with Respect to Sequence

    • Mark A. Hallen, Bruce R. Donald
    Pages 122-135

  16. Efficient and Accurate Multiple-Phenotypes Regression Method for High Dimensional Data Considering Population Structure

    • Jong Wha J. Joo, Eun Yong Kang, Elin Org, Nick Furlotte, Brian Parks, Aldons J. Lusis et al.
    Pages 136-153

  17. BWM*: A Novel, Provable, Ensemble-Based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design

    • Jonathan D. Jou, Swati Jain, Ivelin Georgiev, Bruce R. Donald
    Pages 154-166

  18. An Efficient Nonlinear Regression Approach for Genome-Wide Detection of Marginal and Interacting Genetic Variations

    • Seunghak Lee, Aurélie Lozano, Prabhanjan Kambadur, Eric P. Xing
    Pages 167-187

  19. Exploration of Designability of Proteins Using Graph Features of Contact Maps: Beyond Lattice Models

    • Sumudu P. Leelananda, Robert L. Jernigan, Andrzej Kloczkowski
    Pages 188-201

  20. CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer

    • Mark D. M. Leiserson, Hsin-Ta Wu, Fabio Vandin, Benjamin J. Raphael
    Pages 202-204
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Other volumes

  1. Research in Computational Molecular Biology

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About this book

This book constitutes the refereed proceedings of the 19th Annual International Conference on Research in Computational Molecular Biology, RECOMB 2015, held in Warsaw, Poland, in April 2015. The 36 extended abstracts were carefully reviewed and selected from 170 submissions. They report on original research in all areas of computational molecular biology and bioinformatics.

Editors and Affiliations

  • National Center of Biotechnology Information, Bethesda, USA

    Teresa M. Przytycka

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