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Research in Computational Molecular Biology

18th Annual International Conference, RECOMB 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings

  • Conference proceedings
  • © 2014

Overview

Editors:
  1. Roded Sharan

    1. School of Computer Science, Tel Aviv University, Tel Aviv, Israel

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 8394)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: RECOMB 2014.

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Table of contents (35 papers)

  1. Front Matter

    Download chapter PDF

  2. Tractatus: An Exact and Subquadratic Algorithm for Inferring Identical-by-Descent Multi-shared Haplotype Tracts

    • Derek Aguiar, Eric Morrow, Sorin Istrail
    Pages 1-17

  3. HapTree: A Novel Bayesian Framework for Single Individual Polyplotyping Using NGS Data

    • Emily Berger, Deniz Yorukoglu, Jian Peng, Bonnie Berger
    Pages 18-19

  4. Changepoint Analysis for Efficient Variant Calling

    • Adam Bloniarz, Ameet Talwalkar, Jonathan Terhorst, Michael I. Jordan, David Patterson, Bin Yu et al.
    Pages 20-34

  5. On the Representation of de Bruijn Graphs

    • Rayan Chikhi, Antoine Limasset, Shaun Jackman, Jared T. Simpson, Paul Medvedev
    Pages 35-55

  6. Exact Learning of RNA Energy Parameters from Structure

    • Hamidreza Chitsaz, Mohammad Aminisharifabad
    Pages 56-68

  7. An Alignment-Free Regression Approach for Estimating Allele-Specific Expression Using RNA-Seq Data

    • Chen-Ping Fu, Vladimir Jojic, Leonard McMillan
    Pages 69-84

  8. The Generating Function Approach for Peptide Identification in Spectral Networks

    • Adrian Guthals, Christina Boucher, Nuno Bandeira
    Pages 85-99

  9. Decoding Coalescent Hidden Markov Models in Linear Time

    • Kelley Harris, Sara Sheehan, John A. Kamm, Yun S. Song
    Pages 100-114

  10. AptaCluster – A Method to Cluster HT-SELEX Aptamer Pools and Lessons from Its Application

    • Jan Hoinka, Alexey Berezhnoy, Zuben E. Sauna, Eli Gilboa, Teresa M. Przytycka
    Pages 115-128

  11. Learning Sequence Determinants of Protein: Protein Interaction Specificity with Sparse Graphical Models

    • Hetunandan Kamisetty, Bornika Ghosh, Christopher James Langmead, Chris Bailey-Kellogg
    Pages 129-143

  12. On Sufficient Statistics of Least-Squares Superposition of Vector Sets

    • Arun S. Konagurthu, Parthan Kasarapu, Lloyd Allison, James H. Collier, Arthur M. Lesk
    Pages 144-159

  13. IDBA-MTP: A Hybrid MetaTranscriptomic Assembler Based on Protein Information

    • Henry C. M. Leung, S. M. Yiu, Francis Y. L. Chin
    Pages 160-172

  14. MRFalign: Protein Homology Detection through Alignment of Markov Random Fields

    • Jianzhu Ma, Sheng Wang, Zhiyong Wang, Jinbo Xu
    Pages 173-174

  15. An Integrated Model of Multiple-Condition ChIP-Seq Data Reveals Predeterminants of Cdx2 Binding

    • Shaun Mahony, Matthew D. Edwards, Esteban O. Mazzoni, Richard I. Sherwood, Akshay Kakumanu, Carolyn A. Morrison et al.
    Pages 175-176

  16. PASTA: Ultra-Large Multiple Sequence Alignment

    • Siavash Mirarab, Nam Nguyen, Tandy Warnow
    Pages 177-191

  17. Fast Flux Module Detection Using Matroid Theory

    • Arne C. Müller, Frank J. Bruggeman, Brett G. Olivier, Leen Stougie
    Pages 192-206

  18. Building a Pangenome Reference for a Population

    • Ngan Nguyen, Glenn Hickey, Daniel R. Zerbino, Brian Raney, Dent Earl, Joel Armstrong et al.
    Pages 207-221

  19. CSAX: Characterizing Systematic Anomalies in eXpression Data

    • Keith Noto, Carla Brodley, Saeed Majidi, Diana W. Bianchi, Donna K. Slonim
    Pages 222-236

  20. WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads

    • Murray Patterson, Tobias Marschall, Nadia Pisanti, Leo van Iersel, Leen Stougie, Gunnar W. Klau et al.
    Pages 237-249
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Other volumes

  1. Research in Computational Molecular Biology

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About this book

This book constitutes the refereed proceedings of the 18th Annual International Conference on Research in Computational Molecular Biology, RECOMB 2014, held in Pittsburgh, PA, USA, in April 2014. The 35 extended abstracts were carefully reviewed and selected from 154 submissions. They report on original research in all areas of computational molecular biology and bioinformatics.

Editors and Affiliations

  • School of Computer Science, Tel Aviv University, Tel Aviv, Israel

    Roded Sharan

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