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  • © 2013

Mass Spectrometry Data Analysis in Proteomics

Editors:

  • Collects cutting-edge methods and protocols involving mass spectrometry-based proteomics and relevant data analysis
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts to ensure successful results
  • Includes supplementary material: sn.pub/extras

Part of the book series: Methods in Molecular Biology (MIMB, volume 1007)

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Table of contents (17 protocols)

  1. Front Matter

    Pages i-x
  2. Introduction to Mass Spectrometry-Based Proteomics

    • Rune Matthiesen, Jakob Bunkenborg
    Pages 1-45
  3. LC-MS Spectra Processing

    • Rune Matthiesen
    Pages 47-63
  4. Isotopic Distributions

    • Alan L. Rockwood, Magnus Palmblad
    Pages 65-99
  5. Retention Time Prediction and Protein Identification

    • Alex A. Henneman, Magnus Palmblad
    Pages 101-118
  6. Methods and Algorithms for Quantitative Proteomics by Mass Spectrometry

    • Rune Matthiesen, Ana Sofia Carvalho
    Pages 183-217
  7. Considerations in the Analysis of Hydrogen Exchange Mass Spectrometry Data

    • Thomas E. Wales, Michael J. Eggertson, John R. Engen
    Pages 263-288
  8. Permethylated N-Glycan Analysis with Mass Spectrometry

    • Zhenxin Lin, David M. Lubman
    Pages 289-300
  9. Mass Spectrometry Methods for Studying Glycosylation in Cancer

    • Hugo Osório, Celso A. Reis
    Pages 301-316
  10. Proteomics Data Exchange and Storage: The Need for Common Standards and Public Repositories

    • Rafael C. Jiménez, Juan Antonio Vizcaíno
    Pages 317-333
  11. Tools for Protein Posttranslational Modifications Analysis: FAK, a Case Study

    • Catarina Fonseca, Paula Voabil, Ana Sofia Carvalho, Rune Matthiesen
    Pages 335-358
  12. Proteomic Strategies to Characterize Signaling Pathways

    • H. C. Harsha, Sneha M. Pinto, Akhilesh Pandey
    Pages 359-377
  13. Simple Proteomics Data Analysis in the Object-Oriented PowerShell

    • Yassene Mohammed, Magnus Palmblad
    Pages 379-391
  14. Back Matter

    Pages 393-405

About this book

Since the publishing of the first edition, the methodologies and instrumentation involved in the field of mass spectrometry-based proteomics has improved considerably.  Fully revised and expanded, Mass Spectrometry Data Analysis in Proteomics, Second Edition presents expert chapters on specific MS-based methods or data analysis strategies in proteomics. The volume covers data analysis topics relevant for quantitative proteomics, post translational modification, HX-MS, glycomics, and data exchange standards, among other topics.  Written in the highly successful Methods in Molecular Biology series format, chapters include brief introductions to their respective subjects, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.

 

Updated and authoritative, Mass Spectrometry Data Analysis in Proteomics, Second Edition serves as a detailed guide for all researchers seeking to further our knowledge in the field of proteomics.

Editors and Affiliations

  • Inst. Molecular Pathology & Immunology, Universidade do Porto Inst. Molecular Pathology & Immunology, Porto, Portugal

    Rune Matthiesen

Bibliographic Information

  • Book Title: Mass Spectrometry Data Analysis in Proteomics

  • Editors: Rune Matthiesen

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-62703-392-3

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media, LLC 2013

  • Hardcover ISBN: 978-1-62703-391-6Published: 11 May 2013

  • Softcover ISBN: 978-1-4939-5995-2Published: 23 August 2016

  • eBook ISBN: 978-1-62703-392-3Published: 13 May 2013

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 2

  • Number of Pages: X, 405

  • Number of Illustrations: 34 b/w illustrations, 59 illustrations in colour

  • Topics: Protein Science, Mass Spectrometry

Buy it now

Buying options

eBook USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access