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  • © 2012

Fungal Secondary Metabolism

Methods and Protocols

  • Presents methods covering fungal cultivation and transformation to metabolite isolation, purification, and analysis
  • Features detailed and practical laboratory protocols
  • Includes expert tips on troubleshooting and avoiding known pitfalls
  • Includes supplementary material: sn.pub/extras
  • Includes supplementary material: sn.pub/extras

Part of the book series: Methods in Molecular Biology (MIMB, volume 944)

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Table of contents (21 protocols)

  1. Front Matter

    Pages i-xii
  2. Library Preparation and Data Analysis Packages for Rapid Genome Sequencing

    • Kyle R. Pomraning, Kristina M. Smith, Erin L. Bredeweg, Lanelle R. Connolly, Pallavi A. Phatale, Michael Freitag
    Pages 1-22
  3. Bioinformatics Approaches and Software for Detection of Secondary Metabolic Gene Clusters

    • Natalie D. Fedorova, Venkatesh Moktali, Marnix H. Medema
    Pages 23-45
  4. Manipulating Filamentous Fungus Chemical Phenotypes by Growth on Nutritional Arrays

    • José R. Tormo, Francisco J. Asensio, Gerald F. Bills
    Pages 59-78
  5. The “FERMEX” Method for Metabolite-Enriched Fungal Extracts

    • Gerald F. Bills, Anne W. Dombrowski, Michael A. Goetz
    Pages 79-96
  6. Production, Detection, and Purification of Clavine-Type Ergot Alkaloids

    • Christiane Wallwey, Shu-Ming Li
    Pages 121-131
  7. Multi-Copy Genetic Screen in Aspergillus nidulans

    • Hee Soo Park, Jae-Hyuk Yu
    Pages 183-190
  8. Identification of Protein Complexes from Filamentous Fungi with Tandem Affinity Purification

    • Özgür Bayram, Özlem Sarikaya Bayram, Oliver Valerius, Bastian Jöhnk, Gerhard H. Braus
    Pages 191-205
  9. Chromatin Immunoprecipitation Analysis in Filamentous Fungi

    • Stefan Boedi, Yazmid Reyes-Dominguez, Joseph Strauss
    Pages 221-236
  10. Targeted Proteomics for Metabolic Pathway Optimization

    • Tanveer S. Batth, Jay D. Keasling, Christopher J. Petzold
    Pages 237-249
  11. Investigation of In Vivo Protein Interactions in Aspergillus Spores

    • Kwang Cheol Jeong, Jae-Hyuk Yu
    Pages 251-257
  12. Purification of a Vesicle–Vacuole (V) Fraction from Aspergillus

    • Anindya Chanda, Ludmila V. Roze, John E. Linz
    Pages 259-266

About this book

Filamentous fungi have long been known for their ability to produce an enormous range of unusual chemical compounds known as secondary metabolites, many of which have potentially useful antibiotic or pharmacological properties. Recent focus on fungal genomics coupled with advances in detection and molecular manipulation techniques has galvanized a revitalization of this field.  Fungal Secondary Metabolism: Methods and Protocols is aimed at providing the key methodologies currently in use and necessary for accessing and exploiting the natural product information provided by the genomes of this large and varied kingdom. Written by active researchers in the field, the chapters deal with all the steps necessary, from optimization of fungal culture conditions for metabolite production, through rapid genome sequencing and bioinformatics, and genetic manipulations for functional analysis, to detection and testing of metabolites. In addition, chapters on basic science address approaches to the genetic regulation, protein biochemistry, and cellular localization of the biosynthetic pathways. Written in the highly successful Methods in Molecular Biology™ series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.

 

Practical and hands-on, Fungal Secondary Metabolism: Methods and Protocols encourages new investigators to enter the field and expands upon the expertise and range of skills of those already researching fungal natural products.

Reviews

From the book reviews:

“The book ‘Fungal Secondary Metabolism: Methods and protocols’ present methodologies currently used for accessing and discovering the information on natural products in the genome of filamentous fungi. … Should be available in all college, research laboratories and university libraries since this information will be very useful for researchers who study fungal secondary metabolites. In addition, this information will be helpful for any researcher working on the fungal genomics.” (K. W. Thilini Chethana and Kevin D. Hyde, Fungal Diversity, December, 2014)

“This is very much a how-to-do book, prepared by two particularly distinguished mycologists, and designed for those wishing to investigate the chemical possibilities of filamentous fungi. … Steps to be commended are detailed and practical procedures illustrated, accompanied by discussions of the strength and weaknesses of different packages. … The editors and publishers must be congratulated in the extent to which they have managed to marshal their contributors into such a common and lucid style.” (IMA Fungus, Vol. 3 (2), 2012)

Editors and Affiliations

  • , Dept. of Medical Microbiology & Immunolo, University of Wisconsin-Madison, Madison, USA

    Nancy P. Keller

  • , Dept. of Molecular Biology & Biotechnolo, University of Sheffield, Sheffield, United Kingdom

    Geoffrey Turner

Bibliographic Information

  • Book Title: Fungal Secondary Metabolism

  • Book Subtitle: Methods and Protocols

  • Editors: Nancy P. Keller, Geoffrey Turner

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-62703-122-6

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media, LLC 2012

  • Hardcover ISBN: 978-1-62703-121-9Published: 14 October 2012

  • Softcover ISBN: 978-1-4939-5960-0Published: 23 August 2016

  • eBook ISBN: 978-1-62703-122-6Published: 14 October 2012

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XII, 288

  • Topics: Microbiology, Eukaryotic Microbiology, Gene Expression

Buy it now

Buying options

eBook USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access