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  • Book
  • © 2012

Computational Modeling of Signaling Networks

  • Demonstrates how modeling is currently being applied to research in signaling
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts
  • Includes supplementary material: sn.pub/extras

Part of the book series: Methods in Molecular Biology (MIMB, volume 880)

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Table of contents (13 protocols)

  1. Front Matter

    Pages i-xiv
  2. Predictive Models for Cellular Signaling Networks

    • Dagmar Iber, Georgios Fengos
    Pages 1-22
  3. Analyzing and Constraining Signaling Networks: Parameter Estimation for the User

    • Florian Geier, Georgios Fengos, Federico Felizzi, Dagmar Iber
    Pages 23-39
  4. Bistability in One Equation or Fewer

    • Graham A. Anderson, Xuedong Liu, James E. Ferrell Jr.
    Pages 53-67
  5. Mathematical Investigation of How Oncogenic Ras Mutants Promote Ras Signaling

    • Edward C. Stites, Kodi S. Ravichandran
    Pages 69-85
  6. Design of Experiments to Investigate Dynamic Cell Signaling Models

    • Samuel Bandara, Tobias Meyer
    Pages 109-118
  7. Mathematical Modeling of Biochemical Systems with PottersWheel

    • Thomas Maiwald, Oliver Eberhardt, Julie Blumberg
    Pages 119-138
  8. Rule-Based Modeling of Signal Transduction: A Primer

    • John A. P. Sekar, James R. Faeder
    Pages 139-218
  9. Modeling Spatiotemporal Dynamics of Bacterial Populations

    • Hao Song, Lingchong You
    Pages 243-254
  10. Discrete Dynamic Modeling of Signal Transduction Networks

    • Assieh Saadatpour, Réka Albert
    Pages 255-272
  11. Analytic Methods for Modeling Stochastic Regulatory Networks

    • Aleksandra M. Walczak, Andrew Mugler, Chris H. Wiggins
    Pages 273-322
  12. Back Matter

    Pages 323-327

About this book

Signaling networks are composed of numerous signaling pathways and each has its own intricate component parts. Signaling outputs are dynamic, extraordinarily complex and yet highly specific.  In, Computational Modeling of Signaling Networks: Methods and Protocols, expert researchers in the field provide key techniques to study signaling networks. Focusing on Systems of ODEs, parameterization of signaling models, signaling pathways, mass-action kinetics and ODEs, and how to use modeling to plan experiments. Written in the highly successful Methods in Molecular Biology™ series format, the chapters include the kind of detailed description and implementation advice that is crucial for getting optimal results in the laboratory.

 

 

Thorough and intuitive, Computational Modeling of Signaling Networks: Methods and Protocols aids scientists in continuing study of how signaling networks behave in space and time to generate specific biological responses  and how those responses impact biology and medicine.

Editors and Affiliations

  • Dept. Chemistry & Biochemistry, University of Colorado, Boulder, Boulder, USA

    Xuedong Liu

  • Dept. Physics, University of Colorado, Boulder, Boulder, USA

    Meredith D. Betterton

Bibliographic Information

  • Book Title: Computational Modeling of Signaling Networks

  • Editors: Xuedong Liu, Meredith D. Betterton

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-61779-833-7

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media, LLC 2012

  • Hardcover ISBN: 978-1-61779-832-0Published: 12 June 2012

  • Softcover ISBN: 978-1-4939-5843-6Published: 23 August 2016

  • eBook ISBN: 978-1-61779-833-7Published: 31 January 2013

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XIV, 327

  • Topics: Cell Biology

Buy it now

Buying options

eBook USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access