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Identification of Ligand Binding Site and Protein-Protein Interaction Area

  • Book
  • © 2013

Overview

Editors:
  1. Irena Roterman-Konieczna

    1. Medical College, Bioinformatics and Telemedicine, Jagiellonian University, Cracow, Poland

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  • Comparative analysis of models based on geometry versus those based on knowledge of the biological phenomenon Application note Relation to biological phenomena
  • All illustrations in full color
  • A review of the latest numerical techniques used to identify ligand binding and protein complexation sites

Part of the book series: Focus on Structural Biology (FOSB, volume 8)

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Table of contents (7 chapters)

  1. Front Matter

    Pages i-x
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  2. SuMo: A Tool for Protein Function Inference Based on 3D Structures Comparisons

    • Julie-Anne Chemelle, Emmmanuel Bettler, Christophe Combet, Raphaël Terreux, Christophe Geourjon, Gilbert Deléage
    Pages 1-23

  3. Identification of Pockets on Protein Surface to Predict Protein–Ligand Binding Sites

    • Bingding Huang
    Pages 25-39

  4. Can the Structure of the Hydrophobic Core Determine the Complexation Site?

    • Mateusz Banach, Leszek Konieczny, Irena Roterman-Konieczna
    Pages 41-54

  5. Comparative Analysis of Techniques Oriented on the Recognition of Ligand Binding Area in Proteins

    • PaweÅ‚ Alejster, Mateusz Banach, Wiktor Jurkowski, Damian Marchewka, Irena Roterman-Konieczna
    Pages 55-86

  6. Docking Predictions of Protein-Protein Interactions and Their Assessment: The CAPRI Experiment

    • Joël Janin
    Pages 87-104

  7. Prediction of Protein-Protein Binding Interfaces

    • Damian Marchewka, Wiktor Jurkowski, Mateusz Banach, Irena Roterman-Konieczna
    Pages 105-133

  8. Support for Cooperative Experiments in e-Science: From Scientific Workflows to Knowledge Sharing

    • Adam S. Z. Belloum, Reginald Cushing, Spiros Koulouzis, Vladimir Korkhov, Dmitry Vasunin, Victor Guevara-Masis et al.
    Pages 135-159

  9. Back Matter

    Pages 161-167
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Keywords

About this book

This volume presents a review of the latest numerical techniques used to identify ligand binding and protein complexation sites. It should be noted that there are many other theoretical studies devoted to predicting the activity of specific proteins and that useful protein data can be found in numerous databases. The aim of advanced computational techniques is to identify the active sites in specific proteins and moreover to suggest a generalized mechanism by which such protein-ligand (or protein-protein) interactions can be effected. Developing such tools is not an easy task – it requires extensive expertise in the area of molecular biology as well as a firm grasp of numerical modeling methods. Thus, it is often viewed as a prime candidate for interdisciplinary research.

Editors and Affiliations

  • Medical College, Bioinformatics and Telemedicine, Jagiellonian University, Cracow, Poland

    Irena Roterman-Konieczna

Bibliographic Information

  • Book Title: Identification of Ligand Binding Site and Protein-Protein Interaction Area

  • Editors: Irena Roterman-Konieczna

  • Series Title: Focus on Structural Biology

  • DOI: https://doi.org/10.1007/978-94-007-5285-6

  • Publisher: Springer Dordrecht

  • eBook Packages: Chemistry and Materials Science, Chemistry and Material Science (R0)

  • Copyright Information: Springer Science+Business Media Dordrecht 2013

  • Hardcover ISBN: 978-94-007-5284-9Published: 19 October 2012

  • Softcover ISBN: 978-94-017-8284-5Published: 09 November 2014

  • eBook ISBN: 978-94-007-5285-6Published: 19 October 2012

  • Series ISSN: 1571-4853

  • Series E-ISSN: 2542-9566

  • Edition Number: 1

  • Number of Pages: X, 170

  • Topics: Biomedicine general

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