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High-Dimensional Single Cell Analysis

Mass Cytometry, Multi-parametric Flow Cytometry and Bioinformatic Techniques

  • Addresses most interesting questions and applications enabled by high dimensional flow cytometry
  • Reviews current practical approaches used to perform mass cytometry experiments
  • Covers key bioinformatic techniques developed to facilitate analysis of data sets involving dozens of parameters in millions of single cells
  • Includes supplementary material: sn.pub/extras

Part of the book series: Current Topics in Microbiology and Immunology (CT MICROBIOLOGY, volume 377)

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Table of contents (10 chapters)

  1. Front Matter

    Pages i-x
  2. High-Dimensional Single-Cell Cancer Biology

    • Jonathan M. Irish, Deon B. Doxie
    Pages 1-21
  3. A Practical Guide to Multiplexed Mass Cytometry

    • Nevena Zivanovic, Andrea Jacobs, Bernd Bodenmiller
    Pages 95-109
  4. Analysis of Protein Interactions in situ by Proximity Ligation Assays

    • Björn Koos, Linda Andersson, Carl-Magnus Clausson, Karin Grannas, Axel Klaesson, Gaëlle Cane et al.
    Pages 111-126
  5. Hyperspectral Cytometry

    • Gérald Grégori, Bartek Rajwa, Valery Patsekin, James Jones, Motohiro Furuki, Masanobu Yamamoto et al.
    Pages 191-210
  6. Back Matter

    Pages 211-215

About this book

This volume highlights the most interesting biomedical and clinical applications of high-dimensional flow and mass cytometry. It reviews current practical approaches used to perform high-dimensional experiments and addresses key bioinformatic techniques for the analysis of data sets involving dozens of parameters in millions of single cells. Topics include single cell cancer biology; studies of the human immunome; exploration of immunological cell types such as CD8+ T cells; decipherment of signaling processes of cancer; mass-tag cellular barcoding; analysis of protein interactions by proximity ligation assays; Cytobank, a platform for the analysis of cytometry data; computational analysis of high-dimensional flow cytometric data; computational deconvolution approaches for the description of intracellular signaling dynamics and hyperspectral cytometry. All 10 chapters of this book have been written by respected experts in their fields. It is an invaluable reference book for both basic and clinical researchers.

Editors and Affiliations

  • Center for Clinical Sciences Research, Department of Microbiology and Immunology, Stanford School of Medicine, Stanford, USA

    Harris G. Fienberg, Garry P. Nolan

Bibliographic Information

  • Book Title: High-Dimensional Single Cell Analysis

  • Book Subtitle: Mass Cytometry, Multi-parametric Flow Cytometry and Bioinformatic Techniques

  • Editors: Harris G. Fienberg, Garry P. Nolan

  • Series Title: Current Topics in Microbiology and Immunology

  • DOI: https://doi.org/10.1007/978-3-642-54827-7

  • Publisher: Springer Berlin, Heidelberg

  • eBook Packages: Biomedical and Life Sciences, Biomedical and Life Sciences (R0)

  • Copyright Information: The Editor(s) (if applicable) and The Author(s), under exclusive license to Springer-Verlag GmbH, DE, part of Springer Nature 2014

  • Hardcover ISBN: 978-3-642-54826-0Published: 08 May 2014

  • Softcover ISBN: 978-3-662-51267-8Published: 23 August 2016

  • eBook ISBN: 978-3-642-54827-7Published: 22 April 2014

  • Series ISSN: 0070-217X

  • Series E-ISSN: 2196-9965

  • Edition Number: 1

  • Number of Pages: X, 215

  • Number of Illustrations: 1 b/w illustrations, 67 illustrations in colour

  • Topics: Immunology, Cancer Research, Biological Techniques, Bioinformatics

Buy it now

Buying options

eBook USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access