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Bioinformatics Research and Application

7th International Symposium, ISBRA 2011, Changsha, China, May 27-29, 2011, Proceedings

  • Conference proceedings
  • © 2011

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Editors:
  1. Jianer Chen

    1. Department of Computer Science and Engineering, Texas A&M University, College Station, USA

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  2. Jianxin Wang

    1. School of Information Science and Engineering, Central South University, Changsha, China

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    You can also search for this editor in PubMed   Google Scholar

  3. Alexander Zelikovsky

    1. Department of Computer Science, Georgia State University, Atlanta, USA

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 6674)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

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Conference proceedings info: ISBRA 2011.

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Table of contents (41 papers)

  1. Front Matter

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  2. Phylogenetics of Heterogeneous Samples

    • Russell Schwartz
    Pages 1-1

  3. OMG! Orthologs for Multiple Genomes - Competing Formulations

    • David Sankoff
    Pages 2-3

  4. Phylogenetic Analysis of Whole Genomes

    • Bernard M. E. Moret
    Pages 4-7

  5. Genetic and Pharmacogenetic Studies of Neuropsychiatric Disorders: Increasingly Critical Roles of Bioinformatics Research and Applications

    • Liping Wei
    Pages 8-10

  6. Genome-Phenome Association Analysis of Complex Diseases a Structured Sparse Regression Approach

    • Eric Xing
    Pages 11-11

  7. Prediction of Essential Proteins by Integration of PPI Network Topology and Protein Complexes Information

    • Jun Ren, Jianxin Wang, Min Li, Huan Wang, Binbin Liu
    Pages 12-24

  8. Computing the Protein Binding Sites

    • Fei Guo, Lusheng Wang
    Pages 25-36

  9. SETTER - RNA SEcondary sTructure-based TERtiary Structure Similarity Algorithm

    • David Hoksza, Daniel Svozil
    Pages 37-48

  10. Prediction of Essential Genes by Mining Gene Ontology Semantics

    • Yu-Cheng Liu, Po-I Chiu, Hsuan-Cheng Huang, Vincent S. Tseng
    Pages 49-60

  11. High-Performance Blob-Based Iterative Reconstruction of Electron Tomography on Multi-GPUs

    • Xiaohua Wan, Fa Zhang, Qi Chu, Zhiyong Liu
    Pages 61-72

  12. Component-Based Matching for Multiple Interacting RNA Sequences

    • Ghada Badr, Marcel Turcotte
    Pages 73-86

  13. A New Method for Identifying Essential Proteins Based on Edge Clustering Coefficient

    • Huan Wang, Min Li, Jianxin Wang, Yi Pan
    Pages 87-98

  14. Gene Order in Rosid Phylogeny, Inferred from Pairwise Syntenies among Extant Genomes

    • Chunfang Zheng, David Sankoff
    Pages 99-110

  15. Algorithms to Detect Multiprotein Modularity Conserved during Evolution

    • Luqman Hodgkinson, Richard M. Karp
    Pages 111-122

  16. The Kernel of Maximum Agreement Subtrees

    • Krister M. Swenson, Eric Chen, Nicholas D. Pattengale, David Sankoff
    Pages 123-135

  17. A Consensus Approach to Predicting Protein Contact Map via Logistic Regression

    • Jian-Yi Yang, Xin Chen
    Pages 136-147

  18. A Linear Time Algorithm for Error-Corrected Reconciliation of Unrooted Gene Trees

    • PaweÅ‚ Górecki, Oliver Eulenstein
    Pages 148-159

  19. Comprehensive Pharmacogenomic Pathway Screening by Data Assimilation

    • Takanori Hasegawa, Rui Yamaguchi, Masao Nagasaki, Seiya Imoto, Satoru Miyano
    Pages 160-171

  20. The Deep Coalescence Consensus Tree Problem is Pareto on Clusters

    • Harris T. Lin, J. Gordon Burleigh, Oliver Eulenstein
    Pages 172-183
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  1. Bioinformatics Research and Applications

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About this book

This volume constitutes the refereed proceedings of the 7th International Symposium on Bioinformatics Research and Applications, ISBRA 2011, held in Changsha, China, in May 2011. The 36 revised full papers presented together with 4 invited talks were carefully reviewed and selected from 92 submissions. Topics presented span all areas of bioinformatics and computational biology, including the development of experimental or commercial systems.

Editors and Affiliations

  • Department of Computer Science and Engineering, Texas A&M University, College Station, USA

    Jianer Chen

  • School of Information Science and Engineering, Central South University, Changsha, China

    Jianxin Wang

  • Department of Computer Science, Georgia State University, Atlanta, USA

    Alexander Zelikovsky

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