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Research in Computational Molecular Biology

15th Annual International Conference, RECOMB 2011, Vancouver, BC, Canada, March 28-31, 2011. Proceedings

  • Conference proceedings
  • © 2011

Overview

Editors:
  1. Vineet Bafna

    1. EBU3b, University of California San Diego, La Jolla, USA

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  2. S. Cenk Sahinalp

    1. School of Computing Science, Simon Fraser University, Burnaby, Canada

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  • unique visibility fast-track conference proceedings state-of-the-art research

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 6577)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: RECOMB 2011.

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Table of contents (49 papers)

  1. Front Matter

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  2. Bacterial Community Reconstruction Using Compressed Sensing

    • Amnon Amir, Or Zuk
    Pages 1-15

  3. Constrained De Novo Sequencing of Peptides with Application to Conotoxins

    • Swapnil Bhatia, Yong J. Kil, Beatrix Ueberheide, Brian Chait, Lemmuel L. Tayo, Lourdes J. Cruz et al.
    Pages 16-30

  4. Metabolic Network Analysis Demystified

    • Leonid Chindelevitch, Aviv Regev, Bonnie Berger
    Pages 31-33

  5. Causal Reasoning on Biological Networks: Interpreting Transcriptional Changes

    • Leonid Chindelevitch, Daniel Ziemek, Ahmed Enayetallah, Ranjit Randhawa, Ben Sidders, Christoph Brockel et al.
    Pages 34-37

  6. Hapsembler: An Assembler for Highly Polymorphic Genomes

    • Nilgun Donmez, Michael Brudno
    Pages 38-52

  7. Discovery and Characterization of Chromatin States for Systematic Annotation of the Human Genome

    • Jason Ernst, Manolis Kellis
    Pages 53-53

  8. Disease Gene Prioritization Based on Topological Similarity in Protein-Protein Interaction Networks

    • Sinan Erten, Gurkan Bebek, Mehmet Koyutürk
    Pages 54-68

  9. Understanding Gene Sequence Variation in the Context of Transcription Regulation in Yeast

    • Irit Gat-Viks, Renana Meller, Martin Kupiec, Ron Shamir
    Pages 69-69

  10. Identifying Branched Metabolic Pathways by Merging Linear Metabolic Pathways

    • Allison P. Heath, George N. Bennett, Lydia E. Kavraki
    Pages 70-84

  11. A Probabilistic Model for Sequence Alignment with Context-Sensitive Indels

    • Glenn Hickey, Mathieu Blanchette
    Pages 85-103

  12. Simultaneous Structural Variation Discovery in Multiple Paired-End Sequenced Genomes

    • Fereydoun Hormozdiari, Iman Hajirasouliha, Andrew McPherson, Evan E. Eichler, S. Cenk Sahinalp
    Pages 104-105

  13. Variable Selection through Correlation Sifting

    • Jim C. Huang, Nebojsa Jojic
    Pages 106-123

  14. Weighted Genomic Distance Can Hardly Impose a Bound on the Proportion of Transpositions

    • Shuai Jiang, Max A. Alekseyev
    Pages 124-133

  15. PSAR: Measuring Multiple Sequence Alignment Reliability by Probabilistic Sampling

    • Jaebum Kim, Jian Ma
    Pages 134-135

  16. Pedigree Reconstruction Using Identity by Descent

    • Bonnie Kirkpatrick, Shuai Cheng Li, Richard M. Karp, Eran Halperin
    Pages 136-152

  17. A Quantitative Model of Glucose Signaling in Yeast Reveals an Incoherent Feed Forward Loop Leading to a Specific, Transient Pulse of Transcription

    • Sooraj KuttyKrishnan, Jeffrey Sabina, Laura Langton, Mark Johnston, Michael R. Brent
    Pages 153-153

  18. Inferring Mechanisms of Compensation from E-MAP and SGA Data Using Local Search Algorithms for Max Cut

    • Mark D. M. Leiserson, Diana Tatar, Lenore J. Cowen, Benjamin J. Hescott
    Pages 154-167

  19. IsoLasso: A LASSO Regression Approach to RNA-Seq Based Transcriptome Assembly

    • Wei Li, Jianxing Feng, Tao Jiang
    Pages 168-188

  20. Haplotype Reconstruction in Large Pedigrees with Many Untyped Individuals

    • Xin Li, Jing Li
    Pages 189-203
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Other volumes

  1. Research in Computational Molecular Biology

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About this book

This book constitutes the refereed proceedings of the 15th Annual International Conference on Research in Computational Molecular Biology, RECOMB 2011, held in Vancouver, Canada, in March 2011. The 43 revised full papers were carefully reviewed and selected from 153 submissions. The papers cover a wide range of topics including molecular sequence analysis; recognition of genes and regulatory elements; molecular evolution; gene expression; biological networks; sequencing and genotyping technologies; genomics; population, statistical genetics; systems biology; imaging; computational proteomics; molecular structural biology.

Editors and Affiliations

  • EBU3b, University of California San Diego, La Jolla, USA

    Vineet Bafna

  • School of Computing Science, Simon Fraser University, Burnaby, Canada

    S. Cenk Sahinalp

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