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Comparative Genomics

International Workshop, RECOMB-CG 2010, Ottawa, Canada, October 9-11, 2010, Proceedings

  • Conference proceedings
  • © 2010

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Editors:
  1. Eric Tannier

    1. INRIA Rhône-Alpes, Université de Lyon 1, Villeurbanne, France

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 6398)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

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Conference proceedings info: RECOMB-CG 2010.

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Table of contents (24 papers)

  1. Front Matter

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  2. Genome Aliquoting Revisited

    • Robert Warren, David Sankoff
    Pages 1-12

  3. The Problem of Chromosome Reincorporation in DCJ Sorting and Halving

    • Jakub Kováč, Marília D. V. Braga, Jens Stoye
    Pages 13-24

  4. Advances on Genome Duplication Distances

    • Yves Gagnon, Olivier Tremblay Savard, Denis Bertrand, Nadia El-Mabrouk
    Pages 25-38

  5. Listing All Parsimonious Reversal Sequences: New Algorithms and Perspectives

    • Ghada Badr, Krister M. Swenson, David Sankoff
    Pages 39-49

  6. Ultra-Perfect Sorting Scenarios

    • Aïda Ouangraoua, Anne Bergeron, Krister M. Swenson
    Pages 50-61

  7. On Sorting Genomes with DCJ and Indels

    • Marília D. V. Braga
    Pages 62-73

  8. The Zero Exemplar Distance Problem

    • Minghui Jiang
    Pages 74-82

  9. Scaffold Filling under the Breakpoint Distance

    • Haitao Jiang, Chunfang Zheng, David Sankoff, Binhai Zhu
    Pages 83-92

  10. An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers

    • Jean-Philippe Doyon, Celine Scornavacca, K. Yu. Gorbunov, Gergely J. Szöllősi, Vincent Ranwez, Vincent Berry
    Pages 93-108

  11. Detecting Highways of Horizontal Gene Transfer

    • Mukul S. Bansal, J. Peter Gogarten, Ron Shamir
    Pages 109-120

  12. On Exploring Genome Rearrangement Phylogenetic Patterns

    • Andrew Wei Xu
    Pages 121-136

  13. Fast and Accurate Phylogenetic Reconstruction from High-Resolution Whole-Genome Data and a Novel Robustness Estimator

    • Yu Lin, Vaibhav Rajan, Bernard M. E. Moret
    Pages 137-148

  14. A Simple Measure of the Dynamics of Segmented Genomes: An Application to Influenza

    • Stéphane Aris-Brosou
    Pages 149-160

  15. Novel Definition and Algorithm for Chaining Fragments with Proportional Overlaps

    • Raluca Uricaru, Alban Mancheron, Eric Rivals
    Pages 161-172

  16. Assessing the Robustness of Complete Bacterial Genome Segmentations

    • Hugo Devillers, Hélène Chiapello, Sophie Schbath, Meriem El Karoui
    Pages 173-187

  17. An Algorithm to Solve the Motif Alignment Problem for Approximate Nested Tandem Repeats

    • Atheer A. Matroud, Michael D. Hendy, Christopher P. Tuffley
    Pages 188-197

  18. Limited Lifespan of Fragile Regions in Mammalian Evolution

    • Max A. Alekseyev, Pavel A. Pevzner
    Pages 198-215

  19. Mapping Association between Long-Range Cis-Regulatory Regions and Their Target Genes Using Comparative Genomics

    • Emmanuel Mongin, Ken Dewar, Mathieu Blanchette
    Pages 216-227

  20. A New Genomic Evolutionary Model for Rearrangements, Duplications, and Losses That Applies across Eukaryotes and Prokaryotes

    • Yu Lin, Bernard M. E. Moret
    Pages 228-239
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Other volumes

  1. Comparative Genomics

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About this book

The complexity of genome evolution has given birth to exciting challenges for computational biologists. A various range of algorithmic, statistical, mathem- ical techniques to elucidate the histories of molecules are developed each year and many are presented at the RECOMB satellite workshop on Comparative Genomics. It is a place where scientists working on all aspects of comparative genomics can share ideas on the development of tools and their application to relevant questions. This volume contains the papers presented at RECOMB-CG 2010, held on October 9–11 in Ottawa. The ?eld is still ?ourishing as seen from the papers presented this year: many developments enrich the combinatorics of genome rearrangements, while gene order phylogenies are becoming more and more - curate, thanks to a mixing of combinatorial and statistical principles, associated with rapid and thoughtful heuristics. Several papers tend to re?ne the models of genome evolution, and more and more genomic events can be modeled, from single nucleotide substitutions in whole genome alignments to large structural mutations or horizontal gene transfers.

Editors and Affiliations

  • INRIA Rhône-Alpes, Université de Lyon 1, Villeurbanne, France

    Eric Tannier

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