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Computational Intelligence Methods for Bioinformatics and Biostatistics

5th International Meeting, CIBB 2008 Vietri sul Mare, Italy, October 3-4, 2008 Revised Selected Papers

  • Conference proceedings
  • © 2009

Overview

Editors:
  1. Francesco Masulli

    1. DISI - Dipartimento di Informatica e Scienze dell’Informazione, Università di Genova, Genova, Italy

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  2. Roberto Tagliaferri

    1. DMI, Dipartimento di Matematica ed Informatica, Università di Salerno, Fisciano (Sa), Italy

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  3. Gennady M. Verkhivker

    1. Department of Pharmaceutical Chemistry, School of Pharmacy, The University of Kansas, Kansas, USA

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 5488)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: CIBB 2008.

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Table of contents (26 papers)

  1. Front Matter

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  3. CIBB Regular Session

    1. Comparative In Silico Evaluation of MYB Transcription Factors in Eucalyptus, Sugarcane and Rice Transcriptomes

      • Nina M. Soares-Cavalcanti, Ana C. Wanderley-Nogueira, Luis C. Belarmino, Petra dos Santos Barros, Ana M. Benko-Iseppon
      Pages 44-55

    2. Building Maps of Drugs Mode-of-Action from Gene Expression Data

      • Francesco Iorio, Roberto Tagliaferri, Diego di Bernardo
      Pages 56-65

    3. In Silico Evaluation of Osmoprotectants in Eucalyptus Transcriptome

      • Petra dos Santos Barros, Nina M. Soares-Cavalcanti, Gabriela S. Vieira-Mello, Ana C. Wanderley-Nogueira, Tercílio Calsa-Junior, Ana M. Benko-Iseppon
      Pages 66-77

    4. Mining Association Rule Bases from Integrated Genomic Data and Annotations

      • Ricardo Martinez, Nicolas Pasquier, Claude Pasquier
      Pages 78-90

    5. Stability and Performances in Biclustering Algorithms

      • Maurizio Filippone, Francesco Masulli, Stefano Rovetta
      Pages 91-101

    6. Splice Site Prediction Using Artificial Neural Networks

      • ∅ystein Johansen, Tom Ryen, Trygve Eftes∅l, Thomas Kjosmoen, Peter Ruoff
      Pages 102-113

    7. Interval Length Analysis in Multi Layer Model

      • Vito Di Gesù, Giosuè Lo Bosco, Luca Pinello
      Pages 114-122

    8. A Multivariate Algorithm for Gene Selection Based on the Nearest Neighbor Probability

      • Enrico Ferrari, Marco Muselli
      Pages 123-131

    9. Control of Cellular Glycolysis by Perturbations in the Glucose Influx

      • Jaime Arturo de la Torre, Maria Carmen Lemos, Antonio Córdoba
      Pages 132-143

    10. Curating a Large-Scale Regulatory Network by Evaluating Its Consistency with Expression Datasets

      • Carito Guziolowski, Jeremy Gruel, Ovidiu Radulescu, Anne Siegel
      Pages 144-155

    11. Spatial Clustering of Molecular Dynamics Trajectories in Protein Unfolding Simulations

      • Pedro Gabriel Ferreira, Cândida G. Silva, Paulo J. Azevedo, Rui M. M. Brito
      Pages 156-166

    12. Clustering Bacteria Species Using Neural Gas: Preliminary Study

      • Claudio Mirabello, Riccardo Rizzo, Alfonso Urso, Salvatore Gaglio
      Pages 167-176

    13. A New Linear Initialization in SOM for Biomolecular Data

      • Antonino Fiannaca, Giuseppe Di Fatta, Alfonso Urso, Riccardo Rizzo, Salvatore Gaglio
      Pages 177-187

    14. 3D Volume Reconstruction and Biometric Analysis of Fetal Brain from MR Images

      • Paola Campadelli, Elena Casiraghi, Gabriele Lombardi, Graziano Serrao
      Pages 188-197

    15. Searching for Glycomics Role in Stem Cell Development

      • Anil Sorathiya, Tadas Jucikas, Stephanie Piecewicz, Shiladitya Sengupta, Pietro Liò
      Pages 198-209

    16. A New Protein Representation Based on Fragment Contacts: Towards an Improvement of Contact Maps Predictions

      • Pietro Di Lena, Luciano Margara, Marco Vassura, Piero Fariselli, Rita Casadio
      Pages 210-221
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  1. Computational Intelligence Methods for Bioinformatics and Biostatistics

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About this book

This book constitutes the thoroughly refereed post-conference proceedings of the Fifth International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics, CIBB 2008, held in Vietri sul Mare, Italy, in October 2008. The 23 revised full papers presented together with 3 invited lectures were carefully reviewed and selected from 69 submissions. The main goal of the CIBB meetings is to provide a forum open to researchers from different disciplines to present and discuss problems concerning computational techniques in bioinformatics, systems biology and medical informatics with a particular focus on neural networks, machine learning, fuzzy logic, and evolutionary computation methods.

Editors and Affiliations

  • DISI - Dipartimento di Informatica e Scienze dell’Informazione, Università di Genova, Genova, Italy

    Francesco Masulli

  • DMI, Dipartimento di Matematica ed Informatica, Università di Salerno, Fisciano (Sa), Italy

    Roberto Tagliaferri

  • Department of Pharmaceutical Chemistry, School of Pharmacy, The University of Kansas, Kansas, USA

    Gennady M. Verkhivker

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